RNA–Protein interactions for RNA: ENST00000405807.8

COL4A3BP-204, Transcript of collagen type IV alpha 3 binding protein, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A3BP, Length 2,843 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-204ENST00000405807 NISCHQ9Y2I1 1504 aa31.5■■■□□ 2.63
COL4A3BP-204ENST00000405807 PELP1Q8IZL8 1130 aaKnown RBP28.17■■■□□ 2.1
COL4A3BP-204ENST00000405807 MYT1Q01538 1121 aa27.58■■■□□ 2.01
COL4A3BP-204ENST00000405807 SHROOM4Q9ULL8 1493 aa27.25■■□□□ 1.95
COL4A3BP-204ENST00000405807 SUPT5HO00267 1087 aaKnown RBP27.03■■□□□ 1.92
COL4A3BP-204ENST00000405807 ZCCHC6Q5VYS8 1495 aaKnown RBP26.73■■□□□ 1.87
COL4A3BP-204ENST00000405807 HRCP23327 699 aa26.68■■□□□ 1.86
COL4A3BP-204ENST00000405807 CHIC1Q5VXU3 224 aa26.55■■□□□ 1.84
COL4A3BP-204ENST00000405807 MYO15BQ96JP2 1530 aa26.49■■□□□ 1.83
COL4A3BP-204ENST00000405807 CCDC180Q9P1Z9 1646 aa26.47■■□□□ 1.83
COL4A3BP-204ENST00000405807 TTBK1Q5TCY1 1321 aaPredicted RBP26.4■■□□□ 1.82
COL4A3BP-204ENST00000405807 PCGF6Q9BYE7 350 aa26.29■■□□□ 1.8
COL4A3BP-204ENST00000405807 SCAF1Q9H7N4 1312 aaKnown RBP26.1■■□□□ 1.77
COL4A3BP-204ENST00000405807 DCAF8L2P0C7V8 631 aa26.05■■□□□ 1.76
COL4A3BP-204ENST00000405807 DCAF1Q9Y4B6 1507 aa26.03■■□□□ 1.76
COL4A3BP-204ENST00000405807 PPARGC1BQ86YN6 1023 aaKnown RBP25.98■■□□□ 1.75
COL4A3BP-204ENST00000405807 PRKCSHP14314 528 aaPredicted RBP25.94■■□□□ 1.74
COL4A3BP-204ENST00000405807 LOC105371045A0A1W2PR82 267 aa25.77■■□□□ 1.72
COL4A3BP-204ENST00000405807 TRIM26Q12899 539 aaPredicted RBP25.71■■□□□ 1.71
COL4A3BP-204ENST00000405807 BCL11AQ9H165 835 aa25.59■■□□□ 1.69
COL4A3BP-204ENST00000405807 ZEB1P37275 1124 aaPredicted RBP25.45■■□□□ 1.66
COL4A3BP-204ENST00000405807 FAM9AQ8IZU1 332 aaPredicted RBP25.33■■□□□ 1.65
COL4A3BP-204ENST00000405807 ABCC9O60706 1549 aa25.3■■□□□ 1.64
COL4A3BP-204ENST00000405807 ERICH6Q7L0X2 663 aa25.28■■□□□ 1.64
COL4A3BP-204ENST00000405807 TRIM41Q8WV44 630 aa25.18■■□□□ 1.62
COL4A3BP-204ENST00000405807 APLP2Q06481 763 aa25.16■■□□□ 1.62
COL4A3BP-204ENST00000405807 RSF1Q96T23 1441 aaPredicted RBP25.15■■□□□ 1.62
COL4A3BP-204ENST00000405807 CENPBP07199 599 aaPredicted RBP24.98■■□□□ 1.59
COL4A3BP-204ENST00000405807 RB1CC1Q8TDY2 1594 aa24.95■■□□□ 1.59
COL4A3BP-204ENST00000405807 ACIN1Q9UKV3 1341 aaKnown RBP24.93■■□□□ 1.58
COL4A3BP-204ENST00000405807 SCRIBQ14160 1630 aa24.92■■□□□ 1.58
COL4A3BP-204ENST00000405807 GTF3C3Q9Y5Q9 886 aa24.84■■□□□ 1.57
COL4A3BP-204ENST00000405807 NEUROD1Q13562 356 aa24.79■■□□□ 1.56
COL4A3BP-204ENST00000405807 EHMT2Q96KQ7 1210 aa24.69■■□□□ 1.54
COL4A3BP-204ENST00000405807 CCER1Q8TC90 406 aaPredicted RBP24.53■■□□□ 1.52
COL4A3BP-204ENST00000405807 CECR2Q9BXF3 1484 aa24.52■■□□□ 1.52
COL4A3BP-204ENST00000405807 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.51■■□□□ 1.51
COL4A3BP-204ENST00000405807 SLC24A1O60721 1099 aa24.5■■□□□ 1.51
COL4A3BP-204ENST00000405807 MROH2BQ7Z745 1585 aa24.49■■□□□ 1.51
COL4A3BP-204ENST00000405807 ANP32EQ9BTT0 268 aa24.46■■□□□ 1.51
COL4A3BP-204ENST00000405807 NACADO15069 1562 aa24.41■■□□□ 1.5
COL4A3BP-204ENST00000405807 WIZO95785 1651 aa24.37■■□□□ 1.49
COL4A3BP-204ENST00000405807 DIEXFQ68CQ4 756 aaKnown RBP24.35■■□□□ 1.49
COL4A3BP-204ENST00000405807 BAZ1AQ9NRL2 1556 aaPredicted RBP24.28■■□□□ 1.48
COL4A3BP-204ENST00000405807 WRNQ14191 1432 aaPredicted RBP eCLIP24.27■■□□□ 1.48
COL4A3BP-204ENST00000405807 CSRNP3Q8WYN3 585 aa24.27■■□□□ 1.48
COL4A3BP-204ENST00000405807 EIF4G1Q04637 1599 aaKnown RBP24.25■■□□□ 1.47
COL4A3BP-204ENST00000405807 CEP162Q5TB80 1403 aa24.12■■□□□ 1.45
COL4A3BP-204ENST00000405807 TNIKQ9UKE5 1360 aa24.08■■□□□ 1.45
COL4A3BP-204ENST00000405807 CCDC88BA6NC98 1476 aa24.07■■□□□ 1.44
COL4A3BP-204ENST00000405807 ZNF316A6NFI3 1004 aaPredicted RBP24.05■■□□□ 1.44
COL4A3BP-204ENST00000405807 TOP2AP11388 1531 aaKnown RBP24.03■■□□□ 1.44
COL4A3BP-204ENST00000405807 ABCC8Q09428 1581 aa24.02■■□□□ 1.44
COL4A3BP-204ENST00000405807 EEA1Q15075 1411 aa23.99■■□□□ 1.43
COL4A3BP-204ENST00000405807 SOGA1O94964 1423 aa23.95■■□□□ 1.43
COL4A3BP-204ENST00000405807 UBTFP17480 764 aaKnown RBP23.91■■□□□ 1.42
COL4A3BP-204ENST00000405807 SMARCA2P51531 1590 aa23.89■■□□□ 1.42
COL4A3BP-204ENST00000405807 SMARCA4P51532 1647 aa23.84■■□□□ 1.41
COL4A3BP-204ENST00000405807 ANO8Q9HCE9 1232 aaPredicted RBP23.84■■□□□ 1.41
COL4A3BP-204ENST00000405807 GOLGA3Q08378 1498 aa23.82■■□□□ 1.4
COL4A3BP-204ENST00000405807 EIF5BO60841 1220 aaKnown RBP23.79■■□□□ 1.4
COL4A3BP-204ENST00000405807 RUSC2Q8N2Y8 1516 aa23.78■■□□□ 1.4
COL4A3BP-204ENST00000405807 YTHDC1Q96MU7 727 aaKnown RBP23.77■■□□□ 1.4
COL4A3BP-204ENST00000405807 MIER1Q8N108 512 aa23.73■■□□□ 1.39
COL4A3BP-204ENST00000405807 DAXXQ9UER7 740 aaPredicted RBP23.7■■□□□ 1.39
COL4A3BP-204ENST00000405807 HNRNPUL2Q1KMD3 747 aaKnown RBP23.67■■□□□ 1.38
COL4A3BP-204ENST00000405807 CEP164Q9UPV0 1460 aa23.63■■□□□ 1.37
COL4A3BP-204ENST00000405807 UBE2Q2Q8WVN8 375 aa23.62■■□□□ 1.37
COL4A3BP-204ENST00000405807 TSHZ2Q9NRE2 1034 aa23.58■■□□□ 1.36
COL4A3BP-204ENST00000405807 CLIP1P30622 1438 aa23.58■■□□□ 1.36
COL4A3BP-204ENST00000405807 KIF21BO75037 1637 aa23.56■■□□□ 1.36
COL4A3BP-204ENST00000405807 VPS8Q8N3P4 1428 aa23.54■■□□□ 1.36
COL4A3BP-204ENST00000405807 BAZ1BQ9UIG0 1483 aaKnown RBP23.47■■□□□ 1.35
COL4A3BP-204ENST00000405807 UNC13AQ9UPW8 1703 aa23.44■■□□□ 1.34
COL4A3BP-204ENST00000405807 CLSPNQ9HAW4 1339 aa23.44■■□□□ 1.34
COL4A3BP-204ENST00000405807 SYNJ1O43426 1573 aa23.42■■□□□ 1.34
COL4A3BP-204ENST00000405807 PLEKHG5O94827 1062 aa23.38■■□□□ 1.33
COL4A3BP-204ENST00000405807 PEG3Q9GZU2 1588 aa23.37■■□□□ 1.33
COL4A3BP-204ENST00000405807 RAPGEF2Q9Y4G8 1499 aa23.34■■□□□ 1.33
COL4A3BP-204ENST00000405807 SALL2Q9Y467 1007 aaPredicted RBP23.33■■□□□ 1.33
COL4A3BP-204ENST00000405807 CCDC136Q96JN2 1154 aa23.28■■□□□ 1.32
COL4A3BP-204ENST00000405807 DHX57Q6P158 1386 aaKnown RBP23.28■■□□□ 1.32
COL4A3BP-204ENST00000405807 RANGAP1P46060 587 aaPredicted RBP23.24■■□□□ 1.31
COL4A3BP-204ENST00000405807 PABPN1Q86U42 306 aaKnown RBP eCLIP23.22■■□□□ 1.31
COL4A3BP-204ENST00000405807 SUPT16HQ9Y5B9 1047 aaKnown RBP23.22■■□□□ 1.31
COL4A3BP-204ENST00000405807 BICRAQ9NZM4 1560 aa23.18■■□□□ 1.3
COL4A3BP-204ENST00000405807 ATAD2BQ9ULI0 1458 aa23.14■■□□□ 1.3
COL4A3BP-204ENST00000405807 TOP2BQ02880 1626 aa23.12■■□□□ 1.29
COL4A3BP-204ENST00000405807 PKNOX2Q96KN3 472 aa23.11■■□□□ 1.29
COL4A3BP-204ENST00000405807 ERICH3Q5RHP9 1530 aa23.11■■□□□ 1.29
COL4A3BP-204ENST00000405807 ARAP1Q96P48 1450 aa23.08■■□□□ 1.29
COL4A3BP-204ENST00000405807 RRBP1Q9P2E9 1410 aaKnown RBP23.08■■□□□ 1.29
COL4A3BP-204ENST00000405807 KANK4Q5T7N3 995 aaPredicted RBP23.08■■□□□ 1.28
COL4A3BP-204ENST00000405807 PRXQ9BXM0 1461 aa23.07■■□□□ 1.28
COL4A3BP-204ENST00000405807 PODXL2Q9NZ53 605 aa23.06■■□□□ 1.28
COL4A3BP-204ENST00000405807 CUX2O14529 1486 aa23.03■■□□□ 1.28
COL4A3BP-204ENST00000405807 BIVM-ERCC5R4GMW8 1640 aa22.99■■□□□ 1.27
COL4A3BP-204ENST00000405807 ERICH6BQ5W0A0 696 aa22.99■■□□□ 1.27
COL4A3BP-204ENST00000405807 CCNB3Q8WWL7 1395 aa22.96■■□□□ 1.27
COL4A3BP-204ENST00000405807 DEKP35659 375 aaKnown RBP22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms