Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
LIG3P49916 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.29■□□□□ 0.36
LIG3P49916 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.29■□□□□ 0.36
LIG3P49916 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 GPR89P-201ENST00000407924 1495 ntBASIC17.29■□□□□ 0.36
LIG3P49916 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
LIG3P49916 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
LIG3P49916 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.28■□□□□ 0.36
LIG3P49916 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LIG3P49916 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.28■□□□□ 0.36
LIG3P49916 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.28■□□□□ 0.36
LIG3P49916 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.28■□□□□ 0.36
LIG3P49916 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.28■□□□□ 0.36
LIG3P49916 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LIG3P49916 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LIG3P49916 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC17.28■□□□□ 0.36
LIG3P49916 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.28■□□□□ 0.36
LIG3P49916 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.28■□□□□ 0.36
LIG3P49916 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 MIR940-201ENST00000401276 94 ntBASIC17.28■□□□□ 0.36
LIG3P49916 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.28■□□□□ 0.36
LIG3P49916 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 RPS15P9-201ENST00000494093 319 ntBASIC17.28■□□□□ 0.36
LIG3P49916 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.28■□□□□ 0.36
LIG3P49916 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.28■□□□□ 0.36
LIG3P49916 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.28■□□□□ 0.36
LIG3P49916 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LIG3P49916 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIG3P49916 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.28■□□□□ 0.36
LIG3P49916 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.27■□□□□ 0.36
LIG3P49916 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
LIG3P49916 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
LIG3P49916 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 AC138035.3-201ENST00000622706 2791 ntBASIC17.27■□□□□ 0.36
LIG3P49916 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
LIG3P49916 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
LIG3P49916 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 PTCHD3P3-201ENST00000403073 906 ntBASIC17.27■□□□□ 0.36
LIG3P49916 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.27■□□□□ 0.36
LIG3P49916 AC108751.1-201ENST00000490852 363 ntBASIC17.27■□□□□ 0.36
LIG3P49916 KRT18P58-201ENST00000527480 1120 ntBASIC17.27■□□□□ 0.36
LIG3P49916 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.27■□□□□ 0.36
LIG3P49916 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.27■□□□□ 0.36
LIG3P49916 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIG3P49916 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.27■□□□□ 0.36
LIG3P49916 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.27■□□□□ 0.36
LIG3P49916 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
LIG3P49916 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.27■□□□□ 0.36
LIG3P49916 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIG3P49916 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIG3P49916 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.27■□□□□ 0.35
LIG3P49916 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIG3P49916 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIG3P49916 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.27■□□□□ 0.35
LIG3P49916 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.27■□□□□ 0.35
LIG3P49916 AC092053.1-201ENST00000605787 1936 ntBASIC17.27■□□□□ 0.35
LIG3P49916 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIG3P49916 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LIG3P49916 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
LIG3P49916 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIG3P49916 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LIG3P49916 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
LIG3P49916 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC17.27■□□□□ 0.35
LIG3P49916 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
LIG3P49916 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.26■□□□□ 0.35
LIG3P49916 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LIG3P49916 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms