RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 NISCHQ9Y2I1 1504 aa42.51■■■■■ 4.39
HMGN3-203ENST00000620514 CCDC180Q9P1Z9 1646 aa37.93■■■■□ 3.66
HMGN3-203ENST00000620514 ABCC9O60706 1549 aa37.66■■■■□ 3.62
HMGN3-203ENST00000620514 RB1CC1Q8TDY2 1594 aa35.94■■■■□ 3.34
HMGN3-203ENST00000620514 NACADO15069 1562 aa35.79■■■■□ 3.32
HMGN3-203ENST00000620514 DCAF8L2P0C7V8 631 aa35.76■■■■□ 3.32
HMGN3-203ENST00000620514 MYO15BQ96JP2 1530 aa35.39■■■■□ 3.26
HMGN3-203ENST00000620514 ZCCHC6Q5VYS8 1495 aaKnown RBP35.3■■■■□ 3.24
HMGN3-203ENST00000620514 UNC13AQ9UPW8 1703 aa35.16■■■■□ 3.22
HMGN3-203ENST00000620514 PABPN1Q86U42 306 aaKnown RBP eCLIP35.15■■■■□ 3.22
HMGN3-203ENST00000620514 DCAF1Q9Y4B6 1507 aa35.09■■■■□ 3.21
HMGN3-203ENST00000620514 DNAJC5BQ9UF47 199 aa35.04■■■■□ 3.2
HMGN3-203ENST00000620514 BICRAQ9NZM4 1560 aa34.94■■■■□ 3.18
HMGN3-203ENST00000620514 SCRIBQ14160 1630 aa34.66■■■■□ 3.14
HMGN3-203ENST00000620514 SHROOM4Q9ULL8 1493 aa34.41■■■■□ 3.1
HMGN3-203ENST00000620514 EIF4G1Q04637 1599 aaKnown RBP34.02■■■■□ 3.04
HMGN3-203ENST00000620514 CC2D2AQ9P2K1 1620 aa34.01■■■■□ 3.04
HMGN3-203ENST00000620514 CECR2Q9BXF3 1484 aa33.87■■■■□ 3.01
HMGN3-203ENST00000620514 SMARCA4P51532 1647 aa33.08■■■□□ 2.89
HMGN3-203ENST00000620514 NCAPD3P42695 1498 aa33.05■■■□□ 2.88
HMGN3-203ENST00000620514 ATAD2BQ9ULI0 1458 aa33.03■■■□□ 2.88
HMGN3-203ENST00000620514 BAZ1AQ9NRL2 1556 aaPredicted RBP32.95■■■□□ 2.86
HMGN3-203ENST00000620514 SMARCA2P51531 1590 aa32.92■■■□□ 2.86
HMGN3-203ENST00000620514 HMGXB3Q12766 1538 aa32.82■■■□□ 2.85
HMGN3-203ENST00000620514 MROH2BQ7Z745 1585 aa32.79■■■□□ 2.84
HMGN3-203ENST00000620514 PEG3Q9GZU2 1588 aa32.72■■■□□ 2.83
HMGN3-203ENST00000620514 BAZ1BQ9UIG0 1483 aaKnown RBP32.72■■■□□ 2.83
HMGN3-203ENST00000620514 NESP48681 1621 aa32.48■■■□□ 2.79
HMGN3-203ENST00000620514 ERCC6Q03468 1493 aa32.46■■■□□ 2.79
HMGN3-203ENST00000620514 WIZO95785 1651 aa32.4■■■□□ 2.78
HMGN3-203ENST00000620514 CUX2O14529 1486 aa32.25■■■□□ 2.75
HMGN3-203ENST00000620514 RSF1Q96T23 1441 aaPredicted RBP32.24■■■□□ 2.75
HMGN3-203ENST00000620514 LAMC3Q9Y6N6 1575 aa32.23■■■□□ 2.75
HMGN3-203ENST00000620514 CADPSQ9ULU8 1353 aa32.07■■■□□ 2.73
HMGN3-203ENST00000620514 PDS5BQ9NTI5 1447 aa32.04■■■□□ 2.72
HMGN3-203ENST00000620514 THOC2Q8NI27 1593 aaKnown RBP32.03■■■□□ 2.72
HMGN3-203ENST00000620514 KIF21AQ7Z4S6 1674 aa32.02■■■□□ 2.72
HMGN3-203ENST00000620514 TOP2AP11388 1531 aaKnown RBP32■■■□□ 2.71
HMGN3-203ENST00000620514 DNAJC5Q9H3Z4 198 aa31.84■■■□□ 2.69
HMGN3-203ENST00000620514 CFTRP13569 1480 aa31.78■■■□□ 2.68
HMGN3-203ENST00000620514 MRC2Q9UBG0 1479 aa31.76■■■□□ 2.67
HMGN3-203ENST00000620514 FANCD2Q9BXW9 1451 aa31.72■■■□□ 2.67
HMGN3-203ENST00000620514 CEP164Q9UPV0 1460 aa31.71■■■□□ 2.67
HMGN3-203ENST00000620514 WDR62O43379 1518 aa31.67■■■□□ 2.66
HMGN3-203ENST00000620514 CCDC88BA6NC98 1476 aa31.65■■■□□ 2.66
HMGN3-203ENST00000620514 PRDM2Q13029 1718 aa31.46■■■□□ 2.63
HMGN3-203ENST00000620514 URB2Q14146 1524 aaKnown RBP31.45■■■□□ 2.63
HMGN3-203ENST00000620514 TOPBP1Q92547 1522 aa31.17■■■□□ 2.58
HMGN3-203ENST00000620514 SUPT5HO00267 1087 aaKnown RBP31.12■■■□□ 2.57
HMGN3-203ENST00000620514 DNMBPQ6XZF7 1577 aa31.07■■■□□ 2.56
HMGN3-203ENST00000620514 ABCC8Q09428 1581 aa31.06■■■□□ 2.56
HMGN3-203ENST00000620514 IFT140Q96RY7 1462 aa31.06■■■□□ 2.56
HMGN3-203ENST00000620514 ZNF608Q9ULD9 1512 aaPredicted RBP31.02■■■□□ 2.56
HMGN3-203ENST00000620514 POLA1P09884 1462 aaPredicted RBP30.88■■■□□ 2.53
HMGN3-203ENST00000620514 OSCARQ8IYS5 282 aa30.86■■■□□ 2.53
HMGN3-203ENST00000620514 TARBP1Q13395 1621 aaKnown RBP30.85■■■□□ 2.53
HMGN3-203ENST00000620514 EIF4G3O43432 1585 aaKnown RBP30.83■■■□□ 2.53
HMGN3-203ENST00000620514 AQRO60306 1485 aaKnown RBP eCLIP30.78■■■□□ 2.52
HMGN3-203ENST00000620514 RAD54L2Q9Y4B4 1467 aa30.78■■■□□ 2.52
HMGN3-203ENST00000620514 CUX1P39880 1505 aa30.78■■■□□ 2.52
HMGN3-203ENST00000620514 FGD5Q6ZNL6 1462 aa30.74■■■□□ 2.51
HMGN3-203ENST00000620514 SOGA1O94964 1423 aa30.73■■■□□ 2.51
HMGN3-203ENST00000620514 TDRD9Q8NDG6 1382 aaKnown RBP30.66■■■□□ 2.5
HMGN3-203ENST00000620514 TRIM41Q8WV44 630 aa30.64■■■□□ 2.5
HMGN3-203ENST00000620514 CHD1O14646 1710 aa30.53■■■□□ 2.48
HMGN3-203ENST00000620514 WDR97A6NE52 1622 aa30.51■■■□□ 2.47
HMGN3-203ENST00000620514 FBLN2P98095 1184 aa30.5■■■□□ 2.47
HMGN3-203ENST00000620514 SNAPC4Q5SXM2 1469 aa30.47■■■□□ 2.47
HMGN3-203ENST00000620514 RIMBP3CA6NJZ7 1639 aa30.44■■■□□ 2.46
HMGN3-203ENST00000620514 RIMBP3BA6NNM3 1639 aa30.44■■■□□ 2.46
HMGN3-203ENST00000620514 RIMBP3Q9UFD9 1639 aa30.44■■■□□ 2.46
HMGN3-203ENST00000620514 GRIN2BQ13224 1484 aa30.41■■■□□ 2.46
HMGN3-203ENST00000620514 ABCA10Q8WWZ4 1543 aa30.39■■■□□ 2.46
HMGN3-203ENST00000620514 WRNQ14191 1432 aaPredicted RBP eCLIP30.39■■■□□ 2.45
HMGN3-203ENST00000620514 ARHGEF11O15085 1522 aa30.37■■■□□ 2.45
HMGN3-203ENST00000620514 GAPVD1Q14C86 1478 aa30.37■■■□□ 2.45
HMGN3-203ENST00000620514 SYNJ1O43426 1573 aa30.37■■■□□ 2.45
HMGN3-203ENST00000620514 MAGI1Q96QZ7 1491 aaPredicted RBP30.36■■■□□ 2.45
HMGN3-203ENST00000620514 TOP2BQ02880 1626 aa30.35■■■□□ 2.45
HMGN3-203ENST00000620514 BIVM-ERCC5R4GMW8 1640 aa30.35■■■□□ 2.45
HMGN3-203ENST00000620514 PBRM1Q86U86 1689 aa30.32■■■□□ 2.44
HMGN3-203ENST00000620514 ABCA5Q8WWZ7 1642 aa30.32■■■□□ 2.44
HMGN3-203ENST00000620514 CHMP7Q8WUX9 453 aaPredicted RBP30.31■■■□□ 2.44
HMGN3-203ENST00000620514 SYNJ2O15056 1496 aa30.26■■■□□ 2.44
HMGN3-203ENST00000620514 CLASP1Q7Z460 1538 aa30.19■■■□□ 2.42
HMGN3-203ENST00000620514 CYB5RLQ6IPT4 315 aa30.15■■■□□ 2.42
HMGN3-203ENST00000620514 ARAP1Q96P48 1450 aa30.12■■■□□ 2.41
HMGN3-203ENST00000620514 ADAMTS12P58397 1594 aa30.07■■■□□ 2.4
HMGN3-203ENST00000620514 GRIN2AQ12879 1464 aa30.03■■■□□ 2.4
HMGN3-203ENST00000620514 ERICH3Q5RHP9 1530 aa30■■■□□ 2.39
HMGN3-203ENST00000620514 FHAD1B1AJZ9 1412 aa29.99■■■□□ 2.39
HMGN3-203ENST00000620514 NUP160Q12769 1436 aa29.92■■■□□ 2.38
HMGN3-203ENST00000620514 CEP170Q5SW79 1584 aa29.92■■■□□ 2.38
HMGN3-203ENST00000620514 ERCC6L2Q5T890 1561 aa29.8■■■□□ 2.36
HMGN3-203ENST00000620514 KIF27Q86VH2 1401 aa29.77■■■□□ 2.36
HMGN3-203ENST00000620514 IGF1RP08069 1367 aa29.75■■■□□ 2.35
HMGN3-203ENST00000620514 SHROOM2Q13796 1616 aa29.73■■■□□ 2.35
HMGN3-203ENST00000620514 TRHP20396 242 aaPredicted RBP29.68■■■□□ 2.34
HMGN3-203ENST00000620514 RUSC2Q8N2Y8 1516 aa29.63■■■□□ 2.33
HMGN3-203ENST00000620514 CUL7Q14999 1698 aa29.63■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms