RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 NISCHQ9Y2I1 1504 aa29.52■■■□□ 2.32
SHH-201ENST00000297261 DCAF8L2P0C7V8 631 aa26.92■■□□□ 1.9
SHH-201ENST00000297261 SHROOM4Q9ULL8 1493 aa26.15■■□□□ 1.78
SHH-201ENST00000297261 SUPT5HO00267 1087 aaKnown RBP25.8■■□□□ 1.72
SHH-201ENST00000297261 CCDC180Q9P1Z9 1646 aa24.87■■□□□ 1.57
SHH-201ENST00000297261 ABCC9O60706 1549 aa24.69■■□□□ 1.54
SHH-201ENST00000297261 PCGF6Q9BYE7 350 aa24.68■■□□□ 1.54
SHH-201ENST00000297261 ZCCHC6Q5VYS8 1495 aaKnown RBP24.67■■□□□ 1.54
SHH-201ENST00000297261 EHMT2Q96KQ7 1210 aa24.4■■□□□ 1.5
SHH-201ENST00000297261 PELP1Q8IZL8 1130 aaKnown RBP24.1■■□□□ 1.45
SHH-201ENST00000297261 FAM9AQ8IZU1 332 aaPredicted RBP24.07■■□□□ 1.44
SHH-201ENST00000297261 HRCP23327 699 aa24■■□□□ 1.43
SHH-201ENST00000297261 TRIM41Q8WV44 630 aa24■■□□□ 1.43
SHH-201ENST00000297261 SCRIBQ14160 1630 aa23.98■■□□□ 1.43
SHH-201ENST00000297261 CHIC1Q5VXU3 224 aa23.96■■□□□ 1.43
SHH-201ENST00000297261 PABPN1Q86U42 306 aaKnown RBP eCLIP23.91■■□□□ 1.42
SHH-201ENST00000297261 DCAF1Q9Y4B6 1507 aa23.8■■□□□ 1.4
SHH-201ENST00000297261 ZEB1P37275 1124 aaPredicted RBP23.75■■□□□ 1.39
SHH-201ENST00000297261 PPARGC1BQ86YN6 1023 aaKnown RBP23.74■■□□□ 1.39
SHH-201ENST00000297261 CENPBP07199 599 aaPredicted RBP23.73■■□□□ 1.39
SHH-201ENST00000297261 TTBK1Q5TCY1 1321 aaPredicted RBP23.69■■□□□ 1.38
SHH-201ENST00000297261 NACADO15069 1562 aa23.61■■□□□ 1.37
SHH-201ENST00000297261 RB1CC1Q8TDY2 1594 aa23.55■■□□□ 1.36
SHH-201ENST00000297261 CCER1Q8TC90 406 aaPredicted RBP23.55■■□□□ 1.36
SHH-201ENST00000297261 LOC105371045A0A1W2PR82 267 aa23.51■■□□□ 1.35
SHH-201ENST00000297261 MYT1Q01538 1121 aa23.49■■□□□ 1.35
SHH-201ENST00000297261 TRIM26Q12899 539 aaPredicted RBP23.41■■□□□ 1.34
SHH-201ENST00000297261 YTHDC1Q96MU7 727 aaKnown RBP23.38■■□□□ 1.33
SHH-201ENST00000297261 RSF1Q96T23 1441 aaPredicted RBP23.34■■□□□ 1.33
SHH-201ENST00000297261 UBTFP17480 764 aaKnown RBP23.28■■□□□ 1.32
SHH-201ENST00000297261 RANGAP1P46060 587 aaPredicted RBP23.25■■□□□ 1.31
SHH-201ENST00000297261 MYO15BQ96JP2 1530 aa23.25■■□□□ 1.31
SHH-201ENST00000297261 APLP2Q06481 763 aa23.23■■□□□ 1.31
SHH-201ENST00000297261 CECR2Q9BXF3 1484 aa23.16■■□□□ 1.3
SHH-201ENST00000297261 ERICH6Q7L0X2 663 aa22.95■■□□□ 1.26
SHH-201ENST00000297261 BAZ1AQ9NRL2 1556 aaPredicted RBP22.92■■□□□ 1.26
SHH-201ENST00000297261 MROH2BQ7Z745 1585 aa22.92■■□□□ 1.26
SHH-201ENST00000297261 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.8■■□□□ 1.24
SHH-201ENST00000297261 GTF3C3Q9Y5Q9 886 aa22.77■■□□□ 1.24
SHH-201ENST00000297261 DIEXFQ68CQ4 756 aaKnown RBP22.76■■□□□ 1.23
SHH-201ENST00000297261 ATP1B4Q9UN42 357 aaPredicted RBP22.72■■□□□ 1.23
SHH-201ENST00000297261 NEFLP07196 543 aa22.69■■□□□ 1.22
SHH-201ENST00000297261 CSRNP3Q8WYN3 585 aa22.66■■□□□ 1.22
SHH-201ENST00000297261 WIZO95785 1651 aa22.66■■□□□ 1.22
SHH-201ENST00000297261 BAZ1BQ9UIG0 1483 aaKnown RBP22.64■■□□□ 1.21
SHH-201ENST00000297261 ACIN1Q9UKV3 1341 aaKnown RBP22.51■■□□□ 1.19
SHH-201ENST00000297261 CCDC88BA6NC98 1476 aa22.5■■□□□ 1.19
SHH-201ENST00000297261 HNRNPUL2Q1KMD3 747 aaKnown RBP22.49■■□□□ 1.19
SHH-201ENST00000297261 SMARCA4P51532 1647 aa22.47■■□□□ 1.19
SHH-201ENST00000297261 TOP2AP11388 1531 aaKnown RBP22.43■■□□□ 1.18
SHH-201ENST00000297261 WRNQ14191 1432 aaPredicted RBP eCLIP22.4■■□□□ 1.18
SHH-201ENST00000297261 SCAF1Q9H7N4 1312 aaKnown RBP22.39■■□□□ 1.17
SHH-201ENST00000297261 SMARCA2P51531 1590 aa22.33■■□□□ 1.17
SHH-201ENST00000297261 ABCC8Q09428 1581 aa22.29■■□□□ 1.16
SHH-201ENST00000297261 ATAD2BQ9ULI0 1458 aa22.29■■□□□ 1.16
SHH-201ENST00000297261 ITGAEP38570 1179 aa22.24■■□□□ 1.15
SHH-201ENST00000297261 NEUROD1Q13562 356 aa22.23■■□□□ 1.15
SHH-201ENST00000297261 EEA1Q15075 1411 aa22.2■■□□□ 1.14
SHH-201ENST00000297261 SOGA1O94964 1423 aa22.18■■□□□ 1.14
SHH-201ENST00000297261 BCANQ96GW7 911 aa22.18■■□□□ 1.14
SHH-201ENST00000297261 ZNF316A6NFI3 1004 aaPredicted RBP22.12■■□□□ 1.13
SHH-201ENST00000297261 P3H3Q8IVL6 736 aa22.1■■□□□ 1.13
SHH-201ENST00000297261 GOLGA3Q08378 1498 aa22.08■■□□□ 1.12
SHH-201ENST00000297261 BICRAQ9NZM4 1560 aa22.07■■□□□ 1.12
SHH-201ENST00000297261 CEP162Q5TB80 1403 aa22.07■■□□□ 1.12
SHH-201ENST00000297261 CLIP1P30622 1438 aa22.01■■□□□ 1.11
SHH-201ENST00000297261 TNIKQ9UKE5 1360 aa22■■□□□ 1.11
SHH-201ENST00000297261 CEP164Q9UPV0 1460 aa21.97■■□□□ 1.11
SHH-201ENST00000297261 KIF27Q86VH2 1401 aa21.96■■□□□ 1.11
SHH-201ENST00000297261 UNC13AQ9UPW8 1703 aa21.96■■□□□ 1.11
SHH-201ENST00000297261 FBLN2P98095 1184 aa21.95■■□□□ 1.1
SHH-201ENST00000297261 EIF4G1Q04637 1599 aaKnown RBP21.94■■□□□ 1.1
SHH-201ENST00000297261 FAM50AQ14320 339 aaKnown RBP21.92■■□□□ 1.1
SHH-201ENST00000297261 CNGB1Q14028 1251 aaPredicted RBP21.87■■□□□ 1.09
SHH-201ENST00000297261 NCAPD3P42695 1498 aa21.87■■□□□ 1.09
SHH-201ENST00000297261 CADPSQ9ULU8 1353 aa21.85■■□□□ 1.09
SHH-201ENST00000297261 RUSC2Q8N2Y8 1516 aa21.83■■□□□ 1.09
SHH-201ENST00000297261 CUX2O14529 1486 aa21.8■■□□□ 1.08
SHH-201ENST00000297261 ARID3CA6NKF2 412 aa21.78■■□□□ 1.08
SHH-201ENST00000297261 POLR3GLQ9BT43 218 aa21.77■■□□□ 1.08
SHH-201ENST00000297261 RTL5Q5HYW3 569 aaPredicted RBP21.76■■□□□ 1.07
SHH-201ENST00000297261 DAXXQ9UER7 740 aaPredicted RBP21.69■■□□□ 1.06
SHH-201ENST00000297261 CARMIL1Q5VZK9 1371 aa21.67■■□□□ 1.06
SHH-201ENST00000297261 MIER1Q8N108 512 aa21.65■■□□□ 1.06
SHH-201ENST00000297261 CDK11AQ9UQ88 783 aaPredicted RBP21.63■■□□□ 1.05
SHH-201ENST00000297261 PDS5BQ9NTI5 1447 aa21.62■■□□□ 1.05
SHH-201ENST00000297261 HMGXB3Q12766 1538 aa21.62■■□□□ 1.05
SHH-201ENST00000297261 RAPGEF2Q9Y4G8 1499 aa21.61■■□□□ 1.05
SHH-201ENST00000297261 FKBP8Q14318 412 aa21.6■■□□□ 1.05
SHH-201ENST00000297261 FANCD2Q9BXW9 1451 aa21.59■■□□□ 1.05
SHH-201ENST00000297261 PEG3Q9GZU2 1588 aa21.58■■□□□ 1.05
SHH-201ENST00000297261 SYNJ1O43426 1573 aa21.57■■□□□ 1.04
SHH-201ENST00000297261 CC2D2AQ9P2K1 1620 aa21.56■■□□□ 1.04
SHH-201ENST00000297261 ANP32CO43423 234 aa21.56■■□□□ 1.04
SHH-201ENST00000297261 ERCC6Q03468 1493 aa21.55■■□□□ 1.04
SHH-201ENST00000297261 CHMP7Q8WUX9 453 aaPredicted RBP21.54■■□□□ 1.04
SHH-201ENST00000297261 CFTRP13569 1480 aa21.54■■□□□ 1.04
SHH-201ENST00000297261 TDRD9Q8NDG6 1382 aaKnown RBP21.54■■□□□ 1.04
SHH-201ENST00000297261 VPS8Q8N3P4 1428 aa21.53■■□□□ 1.04
SHH-201ENST00000297261 TRIM52Q96A61 297 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 132 ms