RNA–Protein interactions for RNA: ENST00000613922.1

CCL3-204, Transcript of C-C motif chemokine ligand 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCL3, Length 778 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL3-204ENST00000613922 NISCHQ9Y2I1 1504 aa42.65■■■■■ 4.42
CCL3-204ENST00000613922 CCDC180Q9P1Z9 1646 aa38.19■■■■□ 3.7
CCL3-204ENST00000613922 ABCC9O60706 1549 aa37.75■■■■□ 3.63
CCL3-204ENST00000613922 RB1CC1Q8TDY2 1594 aa36.14■■■■□ 3.38
CCL3-204ENST00000613922 NACADO15069 1562 aa35.99■■■■□ 3.35
CCL3-204ENST00000613922 DCAF8L2P0C7V8 631 aa35.7■■■■□ 3.31
CCL3-204ENST00000613922 MYO15BQ96JP2 1530 aa35.64■■■■□ 3.3
CCL3-204ENST00000613922 ZCCHC6Q5VYS8 1495 aaKnown RBP35.43■■■■□ 3.26
CCL3-204ENST00000613922 UNC13AQ9UPW8 1703 aa35.4■■■■□ 3.26
CCL3-204ENST00000613922 DCAF1Q9Y4B6 1507 aa35.3■■■■□ 3.24
CCL3-204ENST00000613922 PABPN1Q86U42 306 aaKnown RBP eCLIP35.15■■■■□ 3.22
CCL3-204ENST00000613922 DNAJC5BQ9UF47 199 aa35.11■■■■□ 3.21
CCL3-204ENST00000613922 BICRAQ9NZM4 1560 aa35.09■■■■□ 3.21
CCL3-204ENST00000613922 SCRIBQ14160 1630 aa34.74■■■■□ 3.15
CCL3-204ENST00000613922 SHROOM4Q9ULL8 1493 aa34.68■■■■□ 3.14
CCL3-204ENST00000613922 EIF4G1Q04637 1599 aaKnown RBP34.18■■■■□ 3.06
CCL3-204ENST00000613922 CC2D2AQ9P2K1 1620 aa34.17■■■■□ 3.06
CCL3-204ENST00000613922 CECR2Q9BXF3 1484 aa33.99■■■■□ 3.03
CCL3-204ENST00000613922 SMARCA4P51532 1647 aa33.21■■■□□ 2.91
CCL3-204ENST00000613922 NCAPD3P42695 1498 aa33.2■■■□□ 2.91
CCL3-204ENST00000613922 ATAD2BQ9ULI0 1458 aa33.14■■■□□ 2.9
CCL3-204ENST00000613922 BAZ1AQ9NRL2 1556 aaPredicted RBP33.09■■■□□ 2.89
CCL3-204ENST00000613922 SMARCA2P51531 1590 aa33.08■■■□□ 2.89
CCL3-204ENST00000613922 HMGXB3Q12766 1538 aa33.01■■■□□ 2.87
CCL3-204ENST00000613922 PEG3Q9GZU2 1588 aa32.92■■■□□ 2.86
CCL3-204ENST00000613922 MROH2BQ7Z745 1585 aa32.85■■■□□ 2.85
CCL3-204ENST00000613922 BAZ1BQ9UIG0 1483 aaKnown RBP32.81■■■□□ 2.84
CCL3-204ENST00000613922 ERCC6Q03468 1493 aa32.55■■■□□ 2.8
CCL3-204ENST00000613922 NESP48681 1621 aa32.54■■■□□ 2.8
CCL3-204ENST00000613922 WIZO95785 1651 aa32.49■■■□□ 2.79
CCL3-204ENST00000613922 CUX2O14529 1486 aa32.45■■■□□ 2.79
CCL3-204ENST00000613922 LAMC3Q9Y6N6 1575 aa32.42■■■□□ 2.78
CCL3-204ENST00000613922 RSF1Q96T23 1441 aaPredicted RBP32.28■■■□□ 2.76
CCL3-204ENST00000613922 THOC2Q8NI27 1593 aaKnown RBP32.2■■■□□ 2.75
CCL3-204ENST00000613922 KIF21AQ7Z4S6 1674 aa32.19■■■□□ 2.74
CCL3-204ENST00000613922 CADPSQ9ULU8 1353 aa32.19■■■□□ 2.74
CCL3-204ENST00000613922 PDS5BQ9NTI5 1447 aa32.17■■■□□ 2.74
CCL3-204ENST00000613922 TOP2AP11388 1531 aaKnown RBP32.1■■■□□ 2.73
CCL3-204ENST00000613922 DNAJC5Q9H3Z4 198 aa32.01■■■□□ 2.71
CCL3-204ENST00000613922 CFTRP13569 1480 aa31.91■■■□□ 2.7
CCL3-204ENST00000613922 MRC2Q9UBG0 1479 aa31.89■■■□□ 2.7
CCL3-204ENST00000613922 WDR62O43379 1518 aa31.83■■■□□ 2.69
CCL3-204ENST00000613922 FANCD2Q9BXW9 1451 aa31.82■■■□□ 2.68
CCL3-204ENST00000613922 CEP164Q9UPV0 1460 aa31.82■■■□□ 2.68
CCL3-204ENST00000613922 PRDM2Q13029 1718 aa31.72■■■□□ 2.67
CCL3-204ENST00000613922 CCDC88BA6NC98 1476 aa31.72■■■□□ 2.67
CCL3-204ENST00000613922 URB2Q14146 1524 aaKnown RBP31.54■■■□□ 2.64
CCL3-204ENST00000613922 TOPBP1Q92547 1522 aa31.27■■■□□ 2.6
CCL3-204ENST00000613922 ABCC8Q09428 1581 aa31.23■■■□□ 2.59
CCL3-204ENST00000613922 DNMBPQ6XZF7 1577 aa31.2■■■□□ 2.58
CCL3-204ENST00000613922 IFT140Q96RY7 1462 aa31.19■■■□□ 2.58
CCL3-204ENST00000613922 ZNF608Q9ULD9 1512 aaPredicted RBP31.08■■■□□ 2.57
CCL3-204ENST00000613922 TARBP1Q13395 1621 aaKnown RBP31■■■□□ 2.55
CCL3-204ENST00000613922 SUPT5HO00267 1087 aaKnown RBP31■■■□□ 2.55
CCL3-204ENST00000613922 EIF4G3O43432 1585 aaKnown RBP30.96■■■□□ 2.55
CCL3-204ENST00000613922 POLA1P09884 1462 aaPredicted RBP30.96■■■□□ 2.55
CCL3-204ENST00000613922 OSCARQ8IYS5 282 aa30.96■■■□□ 2.55
CCL3-204ENST00000613922 CUX1P39880 1505 aa30.85■■■□□ 2.53
CCL3-204ENST00000613922 AQRO60306 1485 aaKnown RBP eCLIP30.83■■■□□ 2.53
CCL3-204ENST00000613922 RAD54L2Q9Y4B4 1467 aa30.82■■■□□ 2.52
CCL3-204ENST00000613922 FGD5Q6ZNL6 1462 aa30.81■■■□□ 2.52
CCL3-204ENST00000613922 SOGA1O94964 1423 aa30.81■■■□□ 2.52
CCL3-204ENST00000613922 WDR97A6NE52 1622 aa30.74■■■□□ 2.51
CCL3-204ENST00000613922 CHD1O14646 1710 aa30.7■■■□□ 2.51
CCL3-204ENST00000613922 TDRD9Q8NDG6 1382 aaKnown RBP30.67■■■□□ 2.5
CCL3-204ENST00000613922 TRIM41Q8WV44 630 aa30.66■■■□□ 2.5
CCL3-204ENST00000613922 RIMBP3CA6NJZ7 1639 aa30.59■■■□□ 2.49
CCL3-204ENST00000613922 RIMBP3BA6NNM3 1639 aa30.59■■■□□ 2.49
CCL3-204ENST00000613922 RIMBP3Q9UFD9 1639 aa30.59■■■□□ 2.49
CCL3-204ENST00000613922 SNAPC4Q5SXM2 1469 aa30.54■■■□□ 2.48
CCL3-204ENST00000613922 GRIN2BQ13224 1484 aa30.52■■■□□ 2.48
CCL3-204ENST00000613922 ABCA10Q8WWZ4 1543 aa30.52■■■□□ 2.48
CCL3-204ENST00000613922 ARHGEF11O15085 1522 aa30.51■■■□□ 2.47
CCL3-204ENST00000613922 MAGI1Q96QZ7 1491 aaPredicted RBP30.5■■■□□ 2.47
CCL3-204ENST00000613922 BIVM-ERCC5R4GMW8 1640 aa30.5■■■□□ 2.47
CCL3-204ENST00000613922 FBLN2P98095 1184 aa30.48■■■□□ 2.47
CCL3-204ENST00000613922 PBRM1Q86U86 1689 aa30.48■■■□□ 2.47
CCL3-204ENST00000613922 TOP2BQ02880 1626 aa30.47■■■□□ 2.47
CCL3-204ENST00000613922 GAPVD1Q14C86 1478 aa30.45■■■□□ 2.47
CCL3-204ENST00000613922 ABCA5Q8WWZ7 1642 aa30.45■■■□□ 2.47
CCL3-204ENST00000613922 WRNQ14191 1432 aaPredicted RBP eCLIP30.44■■■□□ 2.46
CCL3-204ENST00000613922 SYNJ1O43426 1573 aa30.42■■■□□ 2.46
CCL3-204ENST00000613922 SYNJ2O15056 1496 aa30.38■■■□□ 2.45
CCL3-204ENST00000613922 CHMP7Q8WUX9 453 aaPredicted RBP30.35■■■□□ 2.45
CCL3-204ENST00000613922 CLASP1Q7Z460 1538 aa30.35■■■□□ 2.45
CCL3-204ENST00000613922 ARAP1Q96P48 1450 aa30.24■■■□□ 2.43
CCL3-204ENST00000613922 CYB5RLQ6IPT4 315 aa30.19■■■□□ 2.42
CCL3-204ENST00000613922 ADAMTS12P58397 1594 aa30.19■■■□□ 2.42
CCL3-204ENST00000613922 ERICH3Q5RHP9 1530 aa30.14■■■□□ 2.42
CCL3-204ENST00000613922 GRIN2AQ12879 1464 aa30.13■■■□□ 2.41
CCL3-204ENST00000613922 FHAD1B1AJZ9 1412 aa30.09■■■□□ 2.41
CCL3-204ENST00000613922 NUP160Q12769 1436 aa30.04■■■□□ 2.4
CCL3-204ENST00000613922 CEP170Q5SW79 1584 aa30.03■■■□□ 2.4
CCL3-204ENST00000613922 SHROOM2Q13796 1616 aa29.9■■■□□ 2.38
CCL3-204ENST00000613922 ERCC6L2Q5T890 1561 aa29.87■■■□□ 2.37
CCL3-204ENST00000613922 KIF27Q86VH2 1401 aa29.83■■■□□ 2.37
CCL3-204ENST00000613922 IGF1RP08069 1367 aa29.79■■■□□ 2.36
CCL3-204ENST00000613922 CUL7Q14999 1698 aa29.78■■■□□ 2.36
CCL3-204ENST00000613922 RUSC2Q8N2Y8 1516 aa29.75■■■□□ 2.35
CCL3-204ENST00000613922 TRHP20396 242 aaPredicted RBP29.71■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms