Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 AP000842.3-202ENST00000569238 1080 ntBASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 KRT18P28-201ENST00000453838 1332 ntBASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 KRT18P32-201ENST00000424695 1287 ntBASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 HLA-J-203ENST00000494367 1087 ntBASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 AC009093.7-201ENST00000623853 1223 ntBASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM39Q9HCM9 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 FAM58DP-201ENST00000428076 619 ntBASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM39Q9HCM9 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM39Q9HCM9 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM39Q9HCM9 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.27■□□□□ 0.19
TRIM39Q9HCM9 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM39Q9HCM9 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
TRIM39Q9HCM9 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
TRIM39Q9HCM9 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.27■□□□□ 0.19
TRIM39Q9HCM9 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms