RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 NISCHQ9Y2I1 1504 aa39.05■■■■□ 3.84
SHOX-201ENST00000334060 CCDC180Q9P1Z9 1646 aa34.25■■■■□ 3.07
SHOX-201ENST00000334060 ABCC9O60706 1549 aa33.25■■■□□ 2.91
SHOX-201ENST00000334060 ZCCHC6Q5VYS8 1495 aaKnown RBP32.68■■■□□ 2.82
SHOX-201ENST00000334060 DCAF8L2P0C7V8 631 aa32.58■■■□□ 2.81
SHOX-201ENST00000334060 DCAF1Q9Y4B6 1507 aa32.14■■■□□ 2.73
SHOX-201ENST00000334060 NACADO15069 1562 aa32.06■■■□□ 2.72
SHOX-201ENST00000334060 RB1CC1Q8TDY2 1594 aa31.97■■■□□ 2.71
SHOX-201ENST00000334060 MYO15BQ96JP2 1530 aa31.97■■■□□ 2.71
SHOX-201ENST00000334060 SCRIBQ14160 1630 aa31.63■■■□□ 2.65
SHOX-201ENST00000334060 SHROOM4Q9ULL8 1493 aa31.61■■■□□ 2.65
SHOX-201ENST00000334060 UNC13AQ9UPW8 1703 aa31.48■■■□□ 2.63
SHOX-201ENST00000334060 PABPN1Q86U42 306 aaKnown RBP eCLIP31.27■■■□□ 2.6
SHOX-201ENST00000334060 BICRAQ9NZM4 1560 aa31.2■■■□□ 2.59
SHOX-201ENST00000334060 CECR2Q9BXF3 1484 aa30.57■■■□□ 2.48
SHOX-201ENST00000334060 EIF4G1Q04637 1599 aaKnown RBP30.26■■■□□ 2.43
SHOX-201ENST00000334060 MROH2BQ7Z745 1585 aa30.25■■■□□ 2.43
SHOX-201ENST00000334060 SMARCA4P51532 1647 aa30.18■■■□□ 2.42
SHOX-201ENST00000334060 BAZ1AQ9NRL2 1556 aaPredicted RBP30.14■■■□□ 2.42
SHOX-201ENST00000334060 DNAJC5BQ9UF47 199 aa30.09■■■□□ 2.41
SHOX-201ENST00000334060 RSF1Q96T23 1441 aaPredicted RBP30.08■■■□□ 2.41
SHOX-201ENST00000334060 CC2D2AQ9P2K1 1620 aa30.01■■■□□ 2.39
SHOX-201ENST00000334060 WIZO95785 1651 aa29.98■■■□□ 2.39
SHOX-201ENST00000334060 SUPT5HO00267 1087 aaKnown RBP29.97■■■□□ 2.39
SHOX-201ENST00000334060 ATAD2BQ9ULI0 1458 aa29.86■■■□□ 2.37
SHOX-201ENST00000334060 PEG3Q9GZU2 1588 aa29.76■■■□□ 2.35
SHOX-201ENST00000334060 SMARCA2P51531 1590 aa29.69■■■□□ 2.34
SHOX-201ENST00000334060 NCAPD3P42695 1498 aa29.64■■■□□ 2.34
SHOX-201ENST00000334060 BAZ1BQ9UIG0 1483 aaKnown RBP29.61■■■□□ 2.33
SHOX-201ENST00000334060 HMGXB3Q12766 1538 aa29.53■■■□□ 2.32
SHOX-201ENST00000334060 TOP2AP11388 1531 aaKnown RBP29.52■■■□□ 2.32
SHOX-201ENST00000334060 CCDC88BA6NC98 1476 aa29.28■■■□□ 2.28
SHOX-201ENST00000334060 NESP48681 1621 aa29.04■■■□□ 2.24
SHOX-201ENST00000334060 CADPSQ9ULU8 1353 aa28.86■■■□□ 2.21
SHOX-201ENST00000334060 CFTRP13569 1480 aa28.83■■■□□ 2.21
SHOX-201ENST00000334060 LAMC3Q9Y6N6 1575 aa28.72■■■□□ 2.19
SHOX-201ENST00000334060 KIF21AQ7Z4S6 1674 aa28.59■■■□□ 2.17
SHOX-201ENST00000334060 FANCD2Q9BXW9 1451 aa28.58■■■□□ 2.17
SHOX-201ENST00000334060 PRDM2Q13029 1718 aa28.57■■■□□ 2.16
SHOX-201ENST00000334060 ABCC8Q09428 1581 aa28.55■■■□□ 2.16
SHOX-201ENST00000334060 PDS5BQ9NTI5 1447 aa28.49■■■□□ 2.15
SHOX-201ENST00000334060 ERCC6Q03468 1493 aa28.44■■■□□ 2.14
SHOX-201ENST00000334060 CEP164Q9UPV0 1460 aa28.43■■■□□ 2.14
SHOX-201ENST00000334060 URB2Q14146 1524 aaKnown RBP28.34■■■□□ 2.13
SHOX-201ENST00000334060 SYNJ1O43426 1573 aa28.31■■■□□ 2.12
SHOX-201ENST00000334060 CUX1P39880 1505 aa28.31■■■□□ 2.12
SHOX-201ENST00000334060 THOC2Q8NI27 1593 aaKnown RBP28.28■■■□□ 2.12
SHOX-201ENST00000334060 CHIC1Q5VXU3 224 aa28.28■■■□□ 2.12
SHOX-201ENST00000334060 WRNQ14191 1432 aaPredicted RBP eCLIP28.28■■■□□ 2.12
SHOX-201ENST00000334060 MRC2Q9UBG0 1479 aa28.24■■■□□ 2.11
SHOX-201ENST00000334060 TOPBP1Q92547 1522 aa28.21■■■□□ 2.11
SHOX-201ENST00000334060 DNMBPQ6XZF7 1577 aa28.15■■■□□ 2.1
SHOX-201ENST00000334060 WDR62O43379 1518 aa28.14■■■□□ 2.1
SHOX-201ENST00000334060 TOP2BQ02880 1626 aa28.12■■■□□ 2.09
SHOX-201ENST00000334060 BIVM-ERCC5R4GMW8 1640 aa28.1■■■□□ 2.09
SHOX-201ENST00000334060 TRIM41Q8WV44 630 aa28.09■■■□□ 2.09
SHOX-201ENST00000334060 FGD5Q6ZNL6 1462 aa28.08■■■□□ 2.09
SHOX-201ENST00000334060 POLA1P09884 1462 aaPredicted RBP28.04■■■□□ 2.08
SHOX-201ENST00000334060 RAD54L2Q9Y4B4 1467 aa28.03■■■□□ 2.08
SHOX-201ENST00000334060 CUX2O14529 1486 aa28■■■□□ 2.07
SHOX-201ENST00000334060 SOGA1O94964 1423 aa27.89■■■□□ 2.05
SHOX-201ENST00000334060 TARBP1Q13395 1621 aaKnown RBP27.86■■■□□ 2.05
SHOX-201ENST00000334060 RUSC2Q8N2Y8 1516 aa27.86■■■□□ 2.05
SHOX-201ENST00000334060 ZNF608Q9ULD9 1512 aaPredicted RBP27.84■■■□□ 2.05
SHOX-201ENST00000334060 TDRD9Q8NDG6 1382 aaKnown RBP27.79■■■□□ 2.04
SHOX-201ENST00000334060 WDR97A6NE52 1622 aa27.77■■■□□ 2.04
SHOX-201ENST00000334060 FAM9AQ8IZU1 332 aaPredicted RBP27.75■■■□□ 2.03
SHOX-201ENST00000334060 IFT140Q96RY7 1462 aa27.75■■■□□ 2.03
SHOX-201ENST00000334060 AQRO60306 1485 aaKnown RBP eCLIP27.73■■■□□ 2.03
SHOX-201ENST00000334060 ABCA10Q8WWZ4 1543 aa27.73■■■□□ 2.03
SHOX-201ENST00000334060 EIF4G3O43432 1585 aaKnown RBP27.64■■■□□ 2.02
SHOX-201ENST00000334060 ABCA5Q8WWZ7 1642 aa27.62■■■□□ 2.01
SHOX-201ENST00000334060 GAPVD1Q14C86 1478 aa27.56■■■□□ 2
SHOX-201ENST00000334060 KIF27Q86VH2 1401 aa27.55■■■□□ 2
SHOX-201ENST00000334060 EHMT2Q96KQ7 1210 aa27.52■■■□□ 2
SHOX-201ENST00000334060 PBRM1Q86U86 1689 aa27.48■■□□□ 1.99
SHOX-201ENST00000334060 IGF1RP08069 1367 aa27.48■■□□□ 1.99
SHOX-201ENST00000334060 SNAPC4Q5SXM2 1469 aa27.42■■□□□ 1.98
SHOX-201ENST00000334060 GRIN2BQ13224 1484 aa27.42■■□□□ 1.98
SHOX-201ENST00000334060 CSRNP3Q8WYN3 585 aa27.4■■□□□ 1.98
SHOX-201ENST00000334060 ERICH3Q5RHP9 1530 aa27.35■■□□□ 1.97
SHOX-201ENST00000334060 EEA1Q15075 1411 aa27.32■■□□□ 1.96
SHOX-201ENST00000334060 ADAMTS12P58397 1594 aa27.31■■□□□ 1.96
SHOX-201ENST00000334060 LOC105371045A0A1W2PR82 267 aa27.29■■□□□ 1.96
SHOX-201ENST00000334060 CARMIL1Q5VZK9 1371 aa27.29■■□□□ 1.96
SHOX-201ENST00000334060 RAPGEF2Q9Y4G8 1499 aa27.28■■□□□ 1.96
SHOX-201ENST00000334060 PRXQ9BXM0 1461 aa27.27■■□□□ 1.96
SHOX-201ENST00000334060 FBLN2P98095 1184 aa27.26■■□□□ 1.95
SHOX-201ENST00000334060 MAGI1Q96QZ7 1491 aaPredicted RBP27.23■■□□□ 1.95
SHOX-201ENST00000334060 CUL7Q14999 1698 aa27.21■■□□□ 1.95
SHOX-201ENST00000334060 FHAD1B1AJZ9 1412 aa27.21■■□□□ 1.95
SHOX-201ENST00000334060 CHD1O14646 1710 aa27.18■■□□□ 1.94
SHOX-201ENST00000334060 SYNJ2O15056 1496 aa27.17■■□□□ 1.94
SHOX-201ENST00000334060 CHMP7Q8WUX9 453 aaPredicted RBP27.15■■□□□ 1.94
SHOX-201ENST00000334060 KIF21BO75037 1637 aa27.14■■□□□ 1.94
SHOX-201ENST00000334060 GRIN2AQ12879 1464 aa27.13■■□□□ 1.93
SHOX-201ENST00000334060 CEP170Q5SW79 1584 aa27.06■■□□□ 1.92
SHOX-201ENST00000334060 GOLGA3Q08378 1498 aa27.05■■□□□ 1.92
SHOX-201ENST00000334060 UBTFP17480 764 aaKnown RBP27.01■■□□□ 1.91
SHOX-201ENST00000334060 RANGAP1P46060 587 aaPredicted RBP27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 122.9 ms