Protein–RNA interactions for Protein: O43172

PRPF4, U4/U6 small nuclear ribonucleoprotein Prp4, humanhuman

Known RBP eCLIP

Length 522 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4O43172 MAP2K3-206ENST00000479129 574 ntTSL 316.94■□□□□ 0.31e-9■□□□□ 10.2
PRPF4O43172 MAP2K3-207ENST00000483928 511 ntTSL 516.81■□□□□ 0.281e-9■□□□□ 10.2
PRPF4O43172 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.81■□□□□ 0.281e-9■□□□□ 10.2
PRPF4O43172 MAP2K3-213ENST00000583508 607 ntTSL 516.81■□□□□ 0.281e-9■□□□□ 10.2
PRPF4O43172 MAP2K3-211ENST00000529517 514 ntTSL 416.67■□□□□ 0.261e-9■□□□□ 10.2
PRPF4O43172 MAP2K3-212ENST00000534743 541 ntTSL 416.67■□□□□ 0.261e-9■□□□□ 10.2
PRPF4O43172 LAMA5-210ENST00000491036 728 ntTSL 215.36■□□□□ 0.055e-8■□□□□ 10.2
PRPF4O43172 SPG7-213ENST00000566221 734 ntTSL 314.38□□□□□ -0.111e-9■□□□□ 10.2
PRPF4O43172 LAMA5-203ENST00000370691 3160 ntTSL 1 (best)14.08□□□□□ -0.165e-8■□□□□ 10.2
PRPF4O43172 DAZAP1-209ENST00000590419 508 ntTSL 313.81□□□□□ -0.21e-9■□□□□ 10.2
PRPF4O43172 HSP90AA1-205ENST00000555662 429 ntTSL 24.88□□□□□ -1.631e-9■□□□□ 10.2
PRPF4O43172 OBSL1-208ENST00000465149 5380 ntTSL 220.56■□□□□ 0.883e-7■□□□□ 10.2
PRPF4O43172 ZNF189-203ENST00000374861 3134 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.429e-9■□□□□ 10.2
PRPF4O43172 SLC25A29-203ENST00000553359 797 ntTSL 226.71■■□□□ 1.877e-8■□□□□ 10.2
PRPF4O43172 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.25■■□□□ 1.317e-8■□□□□ 10.2
PRPF4O43172 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.317e-8■□□□□ 10.2
PRPF4O43172 GPRC5C-211ENST00000582873 393 ntTSL 322.61■■□□□ 1.212e-10■□□□□ 10.2
PRPF4O43172 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.192e-10■□□□□ 10.2
PRPF4O43172 SLC25A29-218ENST00000556868 1067 ntTSL 222.33■■□□□ 1.177e-8■□□□□ 10.2
PRPF4O43172 TEAD1-204ENST00000527376 477 ntTSL 320.63■□□□□ 0.892e-10■□□□□ 10.2
PRPF4O43172 GPRC5C-208ENST00000581590 1554 ntAPPRIS ALT2 TSL 520.5■□□□□ 0.872e-10■□□□□ 10.2
PRPF4O43172 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.85■□□□□ 0.777e-8■□□□□ 10.2
PRPF4O43172 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.742e-10■□□□□ 10.2
PRPF4O43172 SLC25A29-219ENST00000556873 569 ntTSL 419.45■□□□□ 0.77e-8■□□□□ 10.2
PRPF4O43172 SLC25A29-216ENST00000556715 1025 ntTSL 319.11■□□□□ 0.657e-8■□□□□ 10.2
PRPF4O43172 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.67e-8■□□□□ 10.2
PRPF4O43172 SLC25A29-206ENST00000554224 1124 ntTSL 318.43■□□□□ 0.547e-8■□□□□ 10.2
PRPF4O43172 SLC25A29-205ENST00000554060 674 ntTSL 218.16■□□□□ 0.57e-8■□□□□ 10.2
PRPF4O43172 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.16■□□□□ 0.57e-8■□□□□ 10.2
PRPF4O43172 GPRC5C-206ENST00000482723 2317 ntTSL 217.75■□□□□ 0.432e-10■□□□□ 10.2
PRPF4O43172 FXYD1-207ENST00000589121 512 ntTSL 317.46■□□□□ 0.397e-8■□□□□ 10.2
PRPF4O43172 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.027e-8■□□□□ 10.2
PRPF4O43172 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.56□□□□□ -0.087e-8■□□□□ 10.2
PRPF4O43172 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC13.78□□□□□ -0.27e-8■□□□□ 10.2
PRPF4O43172 TNS3-202ENST00000413551 698 ntTSL 513.66□□□□□ -0.227e-8■□□□□ 10.2
PRPF4O43172 SSUH2-214ENST00000484585 554 ntTSL 413.32□□□□□ -0.287e-8■□□□□ 10.2
PRPF4O43172 SSUH2-206ENST00000427408 559 ntTSL 312.91□□□□□ -0.347e-8■□□□□ 10.2
PRPF4O43172 CCDC144NL-AS1-207ENST00000577537 3727 ntTSL 2 BASIC11.76□□□□□ -0.537e-8■□□□□ 10.2
PRPF4O43172 SSUH2-213ENST00000483845 482 ntTSL 311.36□□□□□ -0.597e-8■□□□□ 10.2
PRPF4O43172 CCDC144NL-AS1-218ENST00000583962 3352 ntTSL 1 (best)11.08□□□□□ -0.647e-8■□□□□ 10.2
PRPF4O43172 SSUH2-210ENST00000466215 492 ntTSL 310.7□□□□□ -0.77e-8■□□□□ 10.2
PRPF4O43172 FBXO18-202ENST00000379999 3702 ntTSL 1 (best) BASIC10.56□□□□□ -0.727e-8■□□□□ 10.2
PRPF4O43172 CCDC144NL-AS1-215ENST00000582324 756 ntTSL 310.39□□□□□ -0.757e-8■□□□□ 10.2
PRPF4O43172 FXYD1-206ENST00000588715 486 ntAPPRIS P1 TSL 2 BASIC9.15□□□□□ -0.947e-8■□□□□ 10.2
PRPF4O43172 SH3YL1-205ENST00000403712 1695 ntTSL 1 (best) BASIC8.5□□□□□ -1.057e-8■□□□□ 10.2
PRPF4O43172 FXYD1-205ENST00000588607 619 ntAPPRIS P1 TSL 3 BASIC8.39□□□□□ -1.077e-8■□□□□ 10.2
PRPF4O43172 FXYD1-209ENST00000590462 620 ntTSL 27.32□□□□□ -1.247e-8■□□□□ 10.2
PRPF4O43172 CCDC144NL-AS1-201ENST00000417232 709 ntTSL 35.8□□□□□ -1.487e-8■□□□□ 10.2
PRPF4O43172 TERF2-205ENST00000566750 917 ntTSL 211.69□□□□□ -0.544e-7■□□□□ 10.2
PRPF4O43172 TERF2-212ENST00000569611 556 ntTSL 48.94□□□□□ -0.984e-7■□□□□ 10.2
PRPF4O43172 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.9■□□□□ 0.144e-6■□□□□ 10.2
PRPF4O43172 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.445e-8■□□□□ 10.2
PRPF4O43172 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.86e-7■□□□□ 10.2
PRPF4O43172 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.666e-7■□□□□ 10.2
PRPF4O43172 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.56e-7■□□□□ 10.2
PRPF4O43172 CACNA2D4-215ENST00000542340 558 ntTSL 319.11■□□□□ 0.651e-7■□□□□ 10.2
PRPF4O43172 CACNA2D4-211ENST00000540728 596 ntTSL 216.37■□□□□ 0.211e-7■□□□□ 10.2
PRPF4O43172 CACNA2D4-212ENST00000541331 498 ntTSL 416.21■□□□□ 0.191e-7■□□□□ 10.2
PRPF4O43172 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.39■□□□□ 0.858e-16■□□□□ 10.2
PRPF4O43172 SNRNP200-201ENST00000323853 7165 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.581e-9■□□□□ 10.2
PRPF4O43172 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.783e-7■□□□□ 10.2
PRPF4O43172 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.63e-7■□□□□ 10.2
PRPF4O43172 SLC16A3-215ENST00000582946 586 ntTSL 416.25■□□□□ 0.191e-8■□□□□ 10.2
PRPF4O43172 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.06■□□□□ 0.962e-10■□□□□ 10.2
PRPF4O43172 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC13.49□□□□□ -0.252e-10■□□□□ 10.2
PRPF4O43172 ILF3-204ENST00000585835 849 ntTSL 313.08□□□□□ -0.322e-10■□□□□ 10.2
PRPF4O43172 ILF3-202ENST00000407004 3671 ntTSL 1 (best) BASIC12.33□□□□□ -0.442e-10■□□□□ 10.2
PRPF4O43172 ILF3-222ENST00000592763 3866 ntTSL 5 BASIC10.91□□□□□ -0.662e-10■□□□□ 10.2
PRPF4O43172 SMARCA1-201ENST00000371121 3564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.422e-6■□□□□ 10.2
PRPF4O43172 SMARCA1-205ENST00000617310 4291 ntTSL 210.5□□□□□ -0.732e-6■□□□□ 10.2
PRPF4O43172 SMARCA1-202ENST00000371122 4099 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.922e-6■□□□□ 10.2
PRPF4O43172 SMARCA1-203ENST00000371123 3948 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.942e-6■□□□□ 10.2
PRPF4O43172 SMARCA1-204ENST00000478420 561 ntTSL 34.33□□□□□ -1.722e-6■□□□□ 10.2
PRPF4O43172 ACADVL-206ENST00000577191 1212 ntTSL 218.67■□□□□ 0.584e-10■□□□□ 10.2
PRPF4O43172 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.553e-6■□□□□ 10.2
PRPF4O43172 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.61■□□□□ 0.413e-6■□□□□ 10.2
PRPF4O43172 SLC26A6-219ENST00000485361 575 ntTSL 414.29□□□□□ -0.122e-11■□□□□ 10.2
PRPF4O43172 HSPA8-222ENST00000534319 1884 ntTSL 2 BASIC12.72□□□□□ -0.375e-6■□□□□ 10.2
PRPF4O43172 HSPA8-201ENST00000227378 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.435e-6■□□□□ 10.2
PRPF4O43172 HSPA8-207ENST00000526110 1924 ntTSL 5 BASIC12□□□□□ -0.495e-6■□□□□ 10.2
PRPF4O43172 HSPA8-215ENST00000532091 2301 ntTSL 511.46□□□□□ -0.575e-6■□□□□ 10.2
PRPF4O43172 SLC26A6-221ENST00000494717 255 ntTSL 410.01□□□□□ -0.812e-11■□□□□ 10.2
PRPF4O43172 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.161e-6■□□□□ 10.2
PRPF4O43172 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.311e-6■□□□□ 10.2
PRPF4O43172 SDF4-206ENST00000478938 2591 ntTSL 222.48■■□□□ 1.191e-6■□□□□ 10.2
PRPF4O43172 SDF4-205ENST00000465727 2095 ntTSL 221.04■□□□□ 0.961e-6■□□□□ 10.2
PRPF4O43172 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.381e-6■□□□□ 10.2
PRPF4O43172 SDF4-207ENST00000494748 3516 ntTSL 216.36■□□□□ 0.211e-6■□□□□ 10.2
PRPF4O43172 SDF4-203ENST00000403997 728 ntTSL 312.67□□□□□ -0.381e-6■□□□□ 10.2
PRPF4O43172 MLLT10-208ENST00000438473 1085 ntTSL 55.24□□□□□ -1.574e-7■□□□□ 10.2
PRPF4O43172 NEAT1-204ENST00000612303 572 ntTSL 3 BASIC13.31□□□□□ -0.284e-64■□□□□ 10.2
PRPF4O43172 RNF31-203ENST00000491351 1804 ntTSL 524.81■■□□□ 1.562e-9■□□□□ 10.2
PRPF4O43172 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.362e-9■□□□□ 10.2
PRPF4O43172 UBE3A-222ENST00000630907 889 ntTSL 524.88■■□□□ 1.572e-8■□□□□ 10.1
PRPF4O43172 UBE3A-213ENST00000626793 733 ntTSL 521.33■■□□□ 1.012e-8■□□□□ 10.1
PRPF4O43172 UBE3A-208ENST00000625681 654 ntTSL 521.33■■□□□ 1.012e-8■□□□□ 10.1
PRPF4O43172 UBE3A-218ENST00000629252 1112 ntTSL 519.38■□□□□ 0.692e-8■□□□□ 10.1
PRPF4O43172 UBE3A-215ENST00000628267 779 ntTSL 519.13■□□□□ 0.652e-8■□□□□ 10.1
PRPF4O43172 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.532e-8■□□□□ 10.1
PRPF4O43172 UBE3A-214ENST00000627018 474 ntTSL 317.79■□□□□ 0.442e-8■□□□□ 10.1
Retrieved 100 of 20,551 protein–RNA pairs in 121.1 ms