RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 NISCHQ9Y2I1 1504 aa38.23■■■■□ 3.71
SDF4-206ENST00000478938 HRCP23327 699 aa36.34■■■■□ 3.41
SDF4-206ENST00000478938 PELP1Q8IZL8 1130 aaKnown RBP35.99■■■■□ 3.35
SDF4-206ENST00000478938 PPARGC1BQ86YN6 1023 aaKnown RBP35.69■■■■□ 3.3
SDF4-206ENST00000478938 PCGF6Q9BYE7 350 aa35.29■■■■□ 3.24
SDF4-206ENST00000478938 SCAF1Q9H7N4 1312 aaKnown RBP34.86■■■■□ 3.17
SDF4-206ENST00000478938 MYO15BQ96JP2 1530 aa34.77■■■■□ 3.16
SDF4-206ENST00000478938 MYT1Q01538 1121 aa34.74■■■■□ 3.15
SDF4-206ENST00000478938 SUPT5HO00267 1087 aaKnown RBP34.59■■■■□ 3.13
SDF4-206ENST00000478938 SHROOM4Q9ULL8 1493 aa34.47■■■■□ 3.11
SDF4-206ENST00000478938 CHIC1Q5VXU3 224 aa34.23■■■■□ 3.07
SDF4-206ENST00000478938 DCAF1Q9Y4B6 1507 aa34.05■■■■□ 3.04
SDF4-206ENST00000478938 TRIM26Q12899 539 aaPredicted RBP33.86■■■■□ 3.01
SDF4-206ENST00000478938 CCDC180Q9P1Z9 1646 aa33.8■■■■□ 3
SDF4-206ENST00000478938 ZEB1P37275 1124 aaPredicted RBP33.75■■■□□ 2.99
SDF4-206ENST00000478938 ACIN1Q9UKV3 1341 aaKnown RBP33.7■■■□□ 2.99
SDF4-206ENST00000478938 NEUROD1Q13562 356 aa33.63■■■□□ 2.97
SDF4-206ENST00000478938 LOC105371045A0A1W2PR82 267 aa33.6■■■□□ 2.97
SDF4-206ENST00000478938 GTF3C3Q9Y5Q9 886 aa33.51■■■□□ 2.95
SDF4-206ENST00000478938 CENPBP07199 599 aaPredicted RBP33.1■■■□□ 2.89
SDF4-206ENST00000478938 TTBK1Q5TCY1 1321 aaPredicted RBP32.77■■■□□ 2.84
SDF4-206ENST00000478938 DIEXFQ68CQ4 756 aaKnown RBP32.73■■■□□ 2.83
SDF4-206ENST00000478938 BCL11AQ9H165 835 aa32.66■■■□□ 2.82
SDF4-206ENST00000478938 ZCCHC6Q5VYS8 1495 aaKnown RBP32.46■■■□□ 2.79
SDF4-206ENST00000478938 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.46■■■□□ 2.79
SDF4-206ENST00000478938 FAM9AQ8IZU1 332 aaPredicted RBP32.45■■■□□ 2.79
SDF4-206ENST00000478938 YTHDC1Q96MU7 727 aaKnown RBP32.39■■■□□ 2.78
SDF4-206ENST00000478938 CCER1Q8TC90 406 aaPredicted RBP32.37■■■□□ 2.77
SDF4-206ENST00000478938 ANP32EQ9BTT0 268 aa32.16■■■□□ 2.74
SDF4-206ENST00000478938 TRIM41Q8WV44 630 aa32.14■■■□□ 2.74
SDF4-206ENST00000478938 EHMT2Q96KQ7 1210 aa32.01■■■□□ 2.71
SDF4-206ENST00000478938 CSRNP3Q8WYN3 585 aa31.91■■■□□ 2.7
SDF4-206ENST00000478938 ZNF316A6NFI3 1004 aaPredicted RBP31.89■■■□□ 2.7
SDF4-206ENST00000478938 PRKCSHP14314 528 aaPredicted RBP31.87■■■□□ 2.69
SDF4-206ENST00000478938 MIER1Q8N108 512 aa31.87■■■□□ 2.69
SDF4-206ENST00000478938 DCAF8L2P0C7V8 631 aa31.83■■■□□ 2.69
SDF4-206ENST00000478938 TSHZ2Q9NRE2 1034 aa31.78■■■□□ 2.68
SDF4-206ENST00000478938 SUPT16HQ9Y5B9 1047 aaKnown RBP31.7■■■□□ 2.67
SDF4-206ENST00000478938 CLSPNQ9HAW4 1339 aa31.43■■■□□ 2.62
SDF4-206ENST00000478938 ABCC9O60706 1549 aa31.27■■■□□ 2.6
SDF4-206ENST00000478938 RB1CC1Q8TDY2 1594 aa31.01■■■□□ 2.55
SDF4-206ENST00000478938 BCANQ96GW7 911 aa31.01■■■□□ 2.55
SDF4-206ENST00000478938 ERICH6Q7L0X2 663 aa30.96■■■□□ 2.55
SDF4-206ENST00000478938 RBM19Q9Y4C8 960 aaKnown RBP30.93■■■□□ 2.54
SDF4-206ENST00000478938 RSF1Q96T23 1441 aaPredicted RBP30.92■■■□□ 2.54
SDF4-206ENST00000478938 WRNQ14191 1432 aaPredicted RBP eCLIP30.87■■■□□ 2.53
SDF4-206ENST00000478938 MSH5O43196 834 aa30.8■■■□□ 2.52
SDF4-206ENST00000478938 FKBP8Q14318 412 aa30.71■■■□□ 2.51
SDF4-206ENST00000478938 HNRNPUL2Q1KMD3 747 aaKnown RBP30.7■■■□□ 2.5
SDF4-206ENST00000478938 APLP2Q06481 763 aa30.65■■■□□ 2.5
SDF4-206ENST00000478938 CEP162Q5TB80 1403 aa30.63■■■□□ 2.49
SDF4-206ENST00000478938 ANO8Q9HCE9 1232 aaPredicted RBP30.6■■■□□ 2.49
SDF4-206ENST00000478938 KCNH8Q96L42 1107 aa30.56■■■□□ 2.48
SDF4-206ENST00000478938 NACADO15069 1562 aa30.55■■■□□ 2.48
SDF4-206ENST00000478938 ITGAEP38570 1179 aa30.53■■■□□ 2.48
SDF4-206ENST00000478938 DEKP35659 375 aaKnown RBP30.42■■■□□ 2.46
SDF4-206ENST00000478938 SCRIBQ14160 1630 aa30.38■■■□□ 2.45
SDF4-206ENST00000478938 NEFLP07196 543 aa30.33■■■□□ 2.45
SDF4-206ENST00000478938 FANCIQ9NVI1 1328 aa30.33■■■□□ 2.45
SDF4-206ENST00000478938 TNIKQ9UKE5 1360 aa30.27■■■□□ 2.44
SDF4-206ENST00000478938 MYT1LQ9UL68 1186 aa30.24■■■□□ 2.43
SDF4-206ENST00000478938 SALL2Q9Y467 1007 aaPredicted RBP30.23■■■□□ 2.43
SDF4-206ENST00000478938 UBTFP17480 764 aaKnown RBP30.12■■■□□ 2.41
SDF4-206ENST00000478938 CCDC136Q96JN2 1154 aa30.1■■■□□ 2.41
SDF4-206ENST00000478938 DHX57Q6P158 1386 aaKnown RBP30.09■■■□□ 2.41
SDF4-206ENST00000478938 ABCC8Q09428 1581 aa30.08■■■□□ 2.41
SDF4-206ENST00000478938 CCDC88BA6NC98 1476 aa30.05■■■□□ 2.4
SDF4-206ENST00000478938 SOGA1O94964 1423 aa30.01■■■□□ 2.39
SDF4-206ENST00000478938 TRIM52Q96A61 297 aa30■■■□□ 2.39
SDF4-206ENST00000478938 CDK11AQ9UQ88 783 aaPredicted RBP30■■■□□ 2.39
SDF4-206ENST00000478938 EIF4G1Q04637 1599 aaKnown RBP29.99■■■□□ 2.39
SDF4-206ENST00000478938 ERICH6BQ5W0A0 696 aa29.94■■■□□ 2.38
SDF4-206ENST00000478938 NBR1Q14596 966 aa29.93■■■□□ 2.38
SDF4-206ENST00000478938 CECR2Q9BXF3 1484 aa29.9■■■□□ 2.38
SDF4-206ENST00000478938 MROH2BQ7Z745 1585 aa29.83■■■□□ 2.37
SDF4-206ENST00000478938 DDX10Q13206 875 aaKnown RBP29.83■■■□□ 2.37
SDF4-206ENST00000478938 UBE2Q2Q8WVN8 375 aa29.83■■■□□ 2.37
SDF4-206ENST00000478938 RUSC2Q8N2Y8 1516 aa29.82■■■□□ 2.36
SDF4-206ENST00000478938 IRX6P78412 446 aaPredicted RBP29.82■■■□□ 2.36
SDF4-206ENST00000478938 ZBTB4Q9P1Z0 1013 aaPredicted RBP29.81■■■□□ 2.36
SDF4-206ENST00000478938 WIZO95785 1651 aa29.8■■■□□ 2.36
SDF4-206ENST00000478938 IL27Q8NEV9 243 aa29.8■■■□□ 2.36
SDF4-206ENST00000478938 GOLGA3Q08378 1498 aa29.79■■■□□ 2.36
SDF4-206ENST00000478938 RTN4Q9NQC3 1192 aaKnown RBP29.77■■■□□ 2.36
SDF4-206ENST00000478938 UNC13AQ9UPW8 1703 aa29.76■■■□□ 2.35
SDF4-206ENST00000478938 NOP58Q9Y2X3 529 aaKnown RBP29.72■■■□□ 2.35
SDF4-206ENST00000478938 PAK3O75914 559 aaPredicted RBP29.71■■■□□ 2.35
SDF4-206ENST00000478938 CLIP1P30622 1438 aa29.7■■■□□ 2.34
SDF4-206ENST00000478938 EEA1Q15075 1411 aa29.66■■■□□ 2.34
SDF4-206ENST00000478938 VPS8Q8N3P4 1428 aa29.66■■■□□ 2.34
SDF4-206ENST00000478938 CCER2I3L3R5 266 aa29.59■■■□□ 2.33
SDF4-206ENST00000478938 PPP1R15AO75807 674 aaPredicted RBP29.58■■■□□ 2.33
SDF4-206ENST00000478938 BAZ1AQ9NRL2 1556 aaPredicted RBP29.53■■■□□ 2.32
SDF4-206ENST00000478938 RTL5Q5HYW3 569 aaPredicted RBP29.51■■■□□ 2.31
SDF4-206ENST00000478938 ANP32CO43423 234 aa29.5■■■□□ 2.31
SDF4-206ENST00000478938 RANGAP1P46060 587 aaPredicted RBP29.45■■■□□ 2.3
SDF4-206ENST00000478938 HIRIP3Q9BW71 556 aaPredicted RBP29.44■■■□□ 2.3
SDF4-206ENST00000478938 PPP4R2Q9NY27 417 aa29.44■■■□□ 2.3
SDF4-206ENST00000478938 BICRAQ9NZM4 1560 aa29.44■■■□□ 2.3
SDF4-206ENST00000478938 WDR97A6NE52 1622 aa29.39■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms