RNA–Protein interactions for RNA: ENST00000263741.11

SDF4-201, Transcript of stromal cell derived factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDF4, Length 2,079 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-201ENST00000263741 NISCHQ9Y2I1 1504 aa44.02■■■■■ 4.64
SDF4-201ENST00000263741 CCDC180Q9P1Z9 1646 aa39.01■■■■□ 3.84
SDF4-201ENST00000263741 ABCC9O60706 1549 aa37.88■■■■□ 3.65
SDF4-201ENST00000263741 ZCCHC6Q5VYS8 1495 aaKnown RBP36.77■■■■□ 3.48
SDF4-201ENST00000263741 DCAF8L2P0C7V8 631 aa36.66■■■■□ 3.46
SDF4-201ENST00000263741 NACADO15069 1562 aa36.51■■■■□ 3.44
SDF4-201ENST00000263741 RB1CC1Q8TDY2 1594 aa36.51■■■■□ 3.43
SDF4-201ENST00000263741 DCAF1Q9Y4B6 1507 aa36.34■■■■□ 3.41
SDF4-201ENST00000263741 MYO15BQ96JP2 1530 aa36.32■■■■□ 3.4
SDF4-201ENST00000263741 UNC13AQ9UPW8 1703 aa35.92■■■■□ 3.34
SDF4-201ENST00000263741 SCRIBQ14160 1630 aa35.74■■■■□ 3.31
SDF4-201ENST00000263741 BICRAQ9NZM4 1560 aa35.47■■■■□ 3.27
SDF4-201ENST00000263741 PABPN1Q86U42 306 aaKnown RBP eCLIP35.42■■■■□ 3.261e-10■■■■□ 21.1
SDF4-201ENST00000263741 SHROOM4Q9ULL8 1493 aa35.14■■■■□ 3.22
SDF4-201ENST00000263741 EIF4G1Q04637 1599 aaKnown RBP34.48■■■■□ 3.11
SDF4-201ENST00000263741 DNAJC5BQ9UF47 199 aa34.39■■■■□ 3.1
SDF4-201ENST00000263741 CECR2Q9BXF3 1484 aa34.32■■■■□ 3.08
SDF4-201ENST00000263741 CC2D2AQ9P2K1 1620 aa34.28■■■■□ 3.08
SDF4-201ENST00000263741 SMARCA4P51532 1647 aa34.15■■■■□ 3.06
SDF4-201ENST00000263741 BAZ1AQ9NRL2 1556 aaPredicted RBP34.08■■■■□ 3.05
SDF4-201ENST00000263741 MROH2BQ7Z745 1585 aa34■■■■□ 3.03
SDF4-201ENST00000263741 ATAD2BQ9ULI0 1458 aa33.79■■■■□ 3
SDF4-201ENST00000263741 SMARCA2P51531 1590 aa33.75■■■□□ 2.99
SDF4-201ENST00000263741 WIZO95785 1651 aa33.72■■■□□ 2.99
SDF4-201ENST00000263741 PEG3Q9GZU2 1588 aa33.72■■■□□ 2.99
SDF4-201ENST00000263741 RSF1Q96T23 1441 aaPredicted RBP33.67■■■□□ 2.98
SDF4-201ENST00000263741 NCAPD3P42695 1498 aa33.65■■■□□ 2.98
SDF4-201ENST00000263741 HMGXB3Q12766 1538 aa33.58■■■□□ 2.97
SDF4-201ENST00000263741 BAZ1BQ9UIG0 1483 aaKnown RBP33.56■■■□□ 2.96
SDF4-201ENST00000263741 TOP2AP11388 1531 aaKnown RBP33.28■■■□□ 2.92
SDF4-201ENST00000263741 SUPT5HO00267 1087 aaKnown RBP33.15■■■□□ 2.9
SDF4-201ENST00000263741 NESP48681 1621 aa32.91■■■□□ 2.86
SDF4-201ENST00000263741 CCDC88BA6NC98 1476 aa32.87■■■□□ 2.85
SDF4-201ENST00000263741 LAMC3Q9Y6N6 1575 aa32.77■■■□□ 2.84
SDF4-201ENST00000263741 CADPSQ9ULU8 1353 aa32.69■■■□□ 2.82
SDF4-201ENST00000263741 CFTRP13569 1480 aa32.61■■■□□ 2.81
SDF4-201ENST00000263741 KIF21AQ7Z4S6 1674 aa32.61■■■□□ 2.81
SDF4-201ENST00000263741 PRDM2Q13029 1718 aa32.58■■■□□ 2.81
SDF4-201ENST00000263741 ERCC6Q03468 1493 aa32.57■■■□□ 2.8
SDF4-201ENST00000263741 PDS5BQ9NTI5 1447 aa32.46■■■□□ 2.79
SDF4-201ENST00000263741 FANCD2Q9BXW9 1451 aa32.4■■■□□ 2.78
SDF4-201ENST00000263741 THOC2Q8NI27 1593 aaKnown RBP32.33■■■□□ 2.77
SDF4-201ENST00000263741 CEP164Q9UPV0 1460 aa32.33■■■□□ 2.77
SDF4-201ENST00000263741 MRC2Q9UBG0 1479 aa32.19■■■□□ 2.74
SDF4-201ENST00000263741 WDR62O43379 1518 aa32.1■■■□□ 2.73
SDF4-201ENST00000263741 URB2Q14146 1524 aaKnown RBP32.1■■■□□ 2.73
SDF4-201ENST00000263741 CUX2O14529 1486 aa32■■■□□ 2.71
SDF4-201ENST00000263741 TOPBP1Q92547 1522 aa31.94■■■□□ 2.7
SDF4-201ENST00000263741 DNMBPQ6XZF7 1577 aa31.93■■■□□ 2.7
SDF4-201ENST00000263741 ABCC8Q09428 1581 aa31.92■■■□□ 2.7
SDF4-201ENST00000263741 CUX1P39880 1505 aa31.88■■■□□ 2.69
SDF4-201ENST00000263741 SYNJ1O43426 1573 aa31.76■■■□□ 2.67
SDF4-201ENST00000263741 WRNQ14191 1432 aaPredicted RBP eCLIP31.73■■■□□ 2.673e-6■■■■□ 26.3
SDF4-201ENST00000263741 BIVM-ERCC5R4GMW8 1640 aa31.7■■■□□ 2.67
SDF4-201ENST00000263741 POLA1P09884 1462 aaPredicted RBP31.7■■■□□ 2.66
SDF4-201ENST00000263741 FGD5Q6ZNL6 1462 aa31.69■■■□□ 2.66
SDF4-201ENST00000263741 TOP2BQ02880 1626 aa31.67■■■□□ 2.66
SDF4-201ENST00000263741 TARBP1Q13395 1621 aaKnown RBP31.6■■■□□ 2.65
SDF4-201ENST00000263741 RAD54L2Q9Y4B4 1467 aa31.59■■■□□ 2.65
SDF4-201ENST00000263741 IFT140Q96RY7 1462 aa31.58■■■□□ 2.65
SDF4-201ENST00000263741 ZNF608Q9ULD9 1512 aaPredicted RBP31.53■■■□□ 2.64
SDF4-201ENST00000263741 SOGA1O94964 1423 aa31.51■■■□□ 2.64
SDF4-201ENST00000263741 WDR97A6NE52 1622 aa31.5■■■□□ 2.63
SDF4-201ENST00000263741 EIF4G3O43432 1585 aaKnown RBP31.46■■■□□ 2.63
SDF4-201ENST00000263741 AQRO60306 1485 aaKnown RBP eCLIP31.35■■■□□ 2.612e-9■■■■□ 19.9
SDF4-201ENST00000263741 TDRD9Q8NDG6 1382 aaKnown RBP31.34■■■□□ 2.61
SDF4-201ENST00000263741 ABCA10Q8WWZ4 1543 aa31.34■■■□□ 2.61
SDF4-201ENST00000263741 ABCA5Q8WWZ7 1642 aa31.27■■■□□ 2.6
SDF4-201ENST00000263741 PBRM1Q86U86 1689 aa31.25■■■□□ 2.59
SDF4-201ENST00000263741 TRIM41Q8WV44 630 aa31.2■■■□□ 2.59
SDF4-201ENST00000263741 GAPVD1Q14C86 1478 aa31.18■■■□□ 2.58
SDF4-201ENST00000263741 GRIN2BQ13224 1484 aa31.1■■■□□ 2.57
SDF4-201ENST00000263741 SNAPC4Q5SXM2 1469 aa31.09■■■□□ 2.57
SDF4-201ENST00000263741 CHIC1Q5VXU3 224 aa31.08■■■□□ 2.57
SDF4-201ENST00000263741 CHD1O14646 1710 aa31.05■■■□□ 2.56
SDF4-201ENST00000263741 KIF27Q86VH2 1401 aa31■■■□□ 2.55
SDF4-201ENST00000263741 RUSC2Q8N2Y8 1516 aa30.98■■■□□ 2.55
SDF4-201ENST00000263741 MAGI1Q96QZ7 1491 aaPredicted RBP30.98■■■□□ 2.55
SDF4-201ENST00000263741 ERICH3Q5RHP9 1530 aa30.96■■■□□ 2.55
SDF4-201ENST00000263741 ADAMTS12P58397 1594 aa30.95■■■□□ 2.55
SDF4-201ENST00000263741 FBLN2P98095 1184 aa30.89■■■□□ 2.54
SDF4-201ENST00000263741 SYNJ2O15056 1496 aa30.87■■■□□ 2.53
SDF4-201ENST00000263741 IGF1RP08069 1367 aa30.82■■■□□ 2.52
SDF4-201ENST00000263741 CUL7Q14999 1698 aa30.81■■■□□ 2.52
SDF4-201ENST00000263741 FHAD1B1AJZ9 1412 aa30.79■■■□□ 2.52
SDF4-201ENST00000263741 CHMP7Q8WUX9 453 aaPredicted RBP30.78■■■□□ 2.52
SDF4-201ENST00000263741 GRIN2AQ12879 1464 aa30.75■■■□□ 2.51
SDF4-201ENST00000263741 OSCARQ8IYS5 282 aa30.7■■■□□ 2.51
SDF4-201ENST00000263741 FAM9AQ8IZU1 332 aaPredicted RBP30.68■■■□□ 2.5
SDF4-201ENST00000263741 CARMIL1Q5VZK9 1371 aa30.66■■■□□ 2.5
SDF4-201ENST00000263741 CEP170Q5SW79 1584 aa30.66■■■□□ 2.5
SDF4-201ENST00000263741 CLASP1Q7Z460 1538 aa30.59■■■□□ 2.49
SDF4-201ENST00000263741 EEA1Q15075 1411 aa30.58■■■□□ 2.49
SDF4-201ENST00000263741 DNAJC5Q9H3Z4 198 aa30.57■■■□□ 2.48
SDF4-201ENST00000263741 NUP160Q12769 1436 aa30.56■■■□□ 2.48
SDF4-201ENST00000263741 RAPGEF2Q9Y4G8 1499 aa30.54■■■□□ 2.48
SDF4-201ENST00000263741 CSRNP3Q8WYN3 585 aa30.53■■■□□ 2.48
SDF4-201ENST00000263741 PRXQ9BXM0 1461 aa30.52■■■□□ 2.48
SDF4-201ENST00000263741 CTTNBP2Q8WZ74 1663 aa30.4■■■□□ 2.46
SDF4-201ENST00000263741 KIF21BO75037 1637 aa30.39■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms