RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 NISCHQ9Y2I1 1504 aa38.83■■■■□ 3.81
SDF4-205ENST00000465727 SHROOM4Q9ULL8 1493 aa33.39■■■□□ 2.94
SDF4-205ENST00000465727 SUPT5HO00267 1087 aaKnown RBP33.13■■■□□ 2.89
SDF4-205ENST00000465727 HRCP23327 699 aa33.08■■■□□ 2.89
SDF4-205ENST00000465727 ZCCHC6Q5VYS8 1495 aaKnown RBP33.03■■■□□ 2.88
SDF4-205ENST00000465727 CCDC180Q9P1Z9 1646 aa32.8■■■□□ 2.84
SDF4-205ENST00000465727 MYO15BQ96JP2 1530 aa32.76■■■□□ 2.83
SDF4-205ENST00000465727 CHIC1Q5VXU3 224 aa32.7■■■□□ 2.83
SDF4-205ENST00000465727 PCGF6Q9BYE7 350 aa32.4■■■□□ 2.78
SDF4-205ENST00000465727 DCAF1Q9Y4B6 1507 aa32.33■■■□□ 2.77
SDF4-205ENST00000465727 PPARGC1BQ86YN6 1023 aaKnown RBP32.03■■■□□ 2.72
SDF4-205ENST00000465727 ABCC9O60706 1549 aa31.92■■■□□ 2.7
SDF4-205ENST00000465727 TRIM26Q12899 539 aaPredicted RBP31.76■■■□□ 2.68
SDF4-205ENST00000465727 DCAF8L2P0C7V8 631 aa31.66■■■□□ 2.66
SDF4-205ENST00000465727 LOC105371045A0A1W2PR82 267 aa31.63■■■□□ 2.65
SDF4-205ENST00000465727 ZEB1P37275 1124 aaPredicted RBP31.54■■■□□ 2.64
SDF4-205ENST00000465727 PELP1Q8IZL8 1130 aaKnown RBP31.52■■■□□ 2.64
SDF4-205ENST00000465727 RSF1Q96T23 1441 aaPredicted RBP30.97■■■□□ 2.55
SDF4-205ENST00000465727 TRIM41Q8WV44 630 aa30.91■■■□□ 2.54
SDF4-205ENST00000465727 SCAF1Q9H7N4 1312 aaKnown RBP30.88■■■□□ 2.53
SDF4-205ENST00000465727 RB1CC1Q8TDY2 1594 aa30.86■■■□□ 2.53
SDF4-205ENST00000465727 SCRIBQ14160 1630 aa30.67■■■□□ 2.5
SDF4-205ENST00000465727 FAM9AQ8IZU1 332 aaPredicted RBP30.53■■■□□ 2.48
SDF4-205ENST00000465727 NACADO15069 1562 aa30.52■■■□□ 2.48
SDF4-205ENST00000465727 ACIN1Q9UKV3 1341 aaKnown RBP30.42■■■□□ 2.46
SDF4-205ENST00000465727 MYT1Q01538 1121 aa30.27■■■□□ 2.44
SDF4-205ENST00000465727 CCER1Q8TC90 406 aaPredicted RBP30.23■■■□□ 2.43
SDF4-205ENST00000465727 CENPBP07199 599 aaPredicted RBP30.21■■■□□ 2.43
SDF4-205ENST00000465727 NEUROD1Q13562 356 aa30.2■■■□□ 2.43
SDF4-205ENST00000465727 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.16■■■□□ 2.42
SDF4-205ENST00000465727 MROH2BQ7Z745 1585 aa30.16■■■□□ 2.42
SDF4-205ENST00000465727 EHMT2Q96KQ7 1210 aa30.12■■■□□ 2.41
SDF4-205ENST00000465727 CECR2Q9BXF3 1484 aa30.12■■■□□ 2.41
SDF4-205ENST00000465727 DIEXFQ68CQ4 756 aaKnown RBP30.1■■■□□ 2.41
SDF4-205ENST00000465727 EIF4G1Q04637 1599 aaKnown RBP30.1■■■□□ 2.41
SDF4-205ENST00000465727 WRNQ14191 1432 aaPredicted RBP eCLIP30.08■■■□□ 2.413e-6■■■■□ 26.3
SDF4-205ENST00000465727 BAZ1AQ9NRL2 1556 aaPredicted RBP30.06■■■□□ 2.4
SDF4-205ENST00000465727 WIZO95785 1651 aa30.06■■■□□ 2.4
SDF4-205ENST00000465727 GTF3C3Q9Y5Q9 886 aa30.01■■■□□ 2.39
SDF4-205ENST00000465727 UNC13AQ9UPW8 1703 aa29.98■■■□□ 2.39
SDF4-205ENST00000465727 PABPN1Q86U42 306 aaKnown RBP eCLIP29.81■■■□□ 2.361e-10■■■■□ 21.1
SDF4-205ENST00000465727 CEP162Q5TB80 1403 aa29.79■■■□□ 2.36
SDF4-205ENST00000465727 BICRAQ9NZM4 1560 aa29.75■■■□□ 2.35
SDF4-205ENST00000465727 TNIKQ9UKE5 1360 aa29.73■■■□□ 2.35
SDF4-205ENST00000465727 ZNF316A6NFI3 1004 aaPredicted RBP29.71■■■□□ 2.35
SDF4-205ENST00000465727 EEA1Q15075 1411 aa29.69■■■□□ 2.34
SDF4-205ENST00000465727 TOP2AP11388 1531 aaKnown RBP29.68■■■□□ 2.34
SDF4-205ENST00000465727 CCDC88BA6NC98 1476 aa29.64■■■□□ 2.34
SDF4-205ENST00000465727 ABCC8Q09428 1581 aa29.61■■■□□ 2.33
SDF4-205ENST00000465727 SMARCA2P51531 1590 aa29.51■■■□□ 2.31
SDF4-205ENST00000465727 SOGA1O94964 1423 aa29.47■■■□□ 2.31
SDF4-205ENST00000465727 DNAJC5BQ9UF47 199 aa29.46■■■□□ 2.31
SDF4-205ENST00000465727 SMARCA4P51532 1647 aa29.44■■■□□ 2.3
SDF4-205ENST00000465727 GOLGA3Q08378 1498 aa29.44■■■□□ 2.3
SDF4-205ENST00000465727 CSRNP3Q8WYN3 585 aa29.41■■■□□ 2.3
SDF4-205ENST00000465727 TTBK1Q5TCY1 1321 aaPredicted RBP29.41■■■□□ 2.3
SDF4-205ENST00000465727 UBTFP17480 764 aaKnown RBP29.3■■■□□ 2.28
SDF4-205ENST00000465727 YTHDC1Q96MU7 727 aaKnown RBP29.29■■■□□ 2.28
SDF4-205ENST00000465727 MIER1Q8N108 512 aa29.28■■■□□ 2.28
SDF4-205ENST00000465727 RUSC2Q8N2Y8 1516 aa29.25■■■□□ 2.27
SDF4-205ENST00000465727 KIF21BO75037 1637 aa29.23■■■□□ 2.27
SDF4-205ENST00000465727 CLSPNQ9HAW4 1339 aa29.2■■■□□ 2.26
SDF4-205ENST00000465727 CEP164Q9UPV0 1460 aa29.2■■■□□ 2.26
SDF4-205ENST00000465727 VPS8Q8N3P4 1428 aa29.09■■■□□ 2.25
SDF4-205ENST00000465727 CLIP1P30622 1438 aa29.07■■■□□ 2.24
SDF4-205ENST00000465727 BAZ1BQ9UIG0 1483 aaKnown RBP29.06■■■□□ 2.24
SDF4-205ENST00000465727 HNRNPUL2Q1KMD3 747 aaKnown RBP29.05■■■□□ 2.24
SDF4-205ENST00000465727 APLP2Q06481 763 aa28.92■■■□□ 2.22
SDF4-205ENST00000465727 SYNJ1O43426 1573 aa28.91■■■□□ 2.22
SDF4-205ENST00000465727 PEG3Q9GZU2 1588 aa28.91■■■□□ 2.22
SDF4-205ENST00000465727 CC2D2AQ9P2K1 1620 aa28.86■■■□□ 2.21
SDF4-205ENST00000465727 SUPT16HQ9Y5B9 1047 aaKnown RBP28.77■■■□□ 2.2
SDF4-205ENST00000465727 DHX57Q6P158 1386 aaKnown RBP28.77■■■□□ 2.2
SDF4-205ENST00000465727 RAPGEF2Q9Y4G8 1499 aa28.76■■■□□ 2.19
SDF4-205ENST00000465727 ERICH3Q5RHP9 1530 aa28.63■■■□□ 2.17
SDF4-205ENST00000465727 CUX2O14529 1486 aa28.59■■■□□ 2.17
SDF4-205ENST00000465727 TOP2BQ02880 1626 aa28.58■■■□□ 2.17
SDF4-205ENST00000465727 RRBP1Q9P2E9 1410 aaKnown RBP28.56■■■□□ 2.16
SDF4-205ENST00000465727 ARAP1Q96P48 1450 aa28.51■■■□□ 2.15
SDF4-205ENST00000465727 TSHZ2Q9NRE2 1034 aa28.5■■■□□ 2.15
SDF4-205ENST00000465727 BIVM-ERCC5R4GMW8 1640 aa28.5■■■□□ 2.15
SDF4-205ENST00000465727 PRXQ9BXM0 1461 aa28.47■■■□□ 2.15
SDF4-205ENST00000465727 ATAD2BQ9ULI0 1458 aa28.44■■■□□ 2.14
SDF4-205ENST00000465727 ANP32EQ9BTT0 268 aa28.43■■■□□ 2.14
SDF4-205ENST00000465727 KANK4Q5T7N3 995 aaPredicted RBP28.33■■■□□ 2.13
SDF4-205ENST00000465727 CCNB3Q8WWL7 1395 aa28.33■■■□□ 2.13
SDF4-205ENST00000465727 RANGAP1P46060 587 aaPredicted RBP28.33■■■□□ 2.13
SDF4-205ENST00000465727 MAPKBP1O60336 1514 aa28.2■■■□□ 2.11
SDF4-205ENST00000465727 NCAPD3P42695 1498 aa28.18■■■□□ 2.1
SDF4-205ENST00000465727 MAP3K1Q13233 1512 aa28.16■■■□□ 2.1
SDF4-205ENST00000465727 KIF27Q86VH2 1401 aa28.15■■■□□ 2.1
SDF4-205ENST00000465727 RAB3GAP2Q9H2M9 1393 aa28.14■■■□□ 2.1
SDF4-205ENST00000465727 ARHGAP35Q9NRY4 1499 aa28.13■■■□□ 2.09
SDF4-205ENST00000465727 KCNH8Q96L42 1107 aa28.06■■■□□ 2.08
SDF4-205ENST00000465727 CUX1P39880 1505 aa28.04■■■□□ 2.08
SDF4-205ENST00000465727 TIMELESSQ9UNS1 1208 aa28.04■■■□□ 2.08
SDF4-205ENST00000465727 TIAM1Q13009 1591 aa28.04■■■□□ 2.08
SDF4-205ENST00000465727 SETD5Q9C0A6 1442 aa28.04■■■□□ 2.08
SDF4-205ENST00000465727 FKBP8Q14318 412 aa28.03■■■□□ 2.08
SDF4-205ENST00000465727 HMGXB3Q12766 1538 aa28.03■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms