Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV17A0A0B4J275 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV17A0A0B4J275 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.7■■□□□ 1.06
TRAV17A0A0B4J275 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV17A0A0B4J275 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV17A0A0B4J275 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV17A0A0B4J275 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.69■■□□□ 1.06
TRAV17A0A0B4J275 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.69■■□□□ 1.06
TRAV17A0A0B4J275 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.69■■□□□ 1.06
TRAV17A0A0B4J275 AC092028.1-203ENST00000608262 953 ntBASIC21.69■■□□□ 1.06
TRAV17A0A0B4J275 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.69■■□□□ 1.06
TRAV17A0A0B4J275 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.69■■□□□ 1.06
TRAV17A0A0B4J275 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.68■■□□□ 1.06
TRAV17A0A0B4J275 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.68■■□□□ 1.06
TRAV17A0A0B4J275 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.68■■□□□ 1.06
TRAV17A0A0B4J275 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.68■■□□□ 1.06
TRAV17A0A0B4J275 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV17A0A0B4J275 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV17A0A0B4J275 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV17A0A0B4J275 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.67■■□□□ 1.06
TRAV17A0A0B4J275 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV17A0A0B4J275 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV17A0A0B4J275 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV17A0A0B4J275 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
TRAV17A0A0B4J275 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV17A0A0B4J275 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV17A0A0B4J275 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV17A0A0B4J275 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.66■■□□□ 1.06
TRAV17A0A0B4J275 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV17A0A0B4J275 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV17A0A0B4J275 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV17A0A0B4J275 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV17A0A0B4J275 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.65■■□□□ 1.06
TRAV17A0A0B4J275 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
TRAV17A0A0B4J275 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.65■■□□□ 1.06
TRAV17A0A0B4J275 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.65■■□□□ 1.06
TRAV17A0A0B4J275 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV17A0A0B4J275 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.64■■□□□ 1.06
TRAV17A0A0B4J275 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV17A0A0B4J275 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV17A0A0B4J275 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.64■■□□□ 1.05
TRAV17A0A0B4J275 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV17A0A0B4J275 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV17A0A0B4J275 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV17A0A0B4J275 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
TRAV17A0A0B4J275 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV17A0A0B4J275 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.63■■□□□ 1.05
TRAV17A0A0B4J275 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.63■■□□□ 1.05
TRAV17A0A0B4J275 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
TRAV17A0A0B4J275 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV17A0A0B4J275 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.63■■□□□ 1.05
TRAV17A0A0B4J275 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.62■■□□□ 1.05
TRAV17A0A0B4J275 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV17A0A0B4J275 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.62■■□□□ 1.05
TRAV17A0A0B4J275 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.62■■□□□ 1.05
TRAV17A0A0B4J275 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV17A0A0B4J275 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV17A0A0B4J275 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.62■■□□□ 1.05
TRAV17A0A0B4J275 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
TRAV17A0A0B4J275 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV17A0A0B4J275 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
TRAV17A0A0B4J275 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV17A0A0B4J275 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.61■■□□□ 1.05
TRAV17A0A0B4J275 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.61■■□□□ 1.05
TRAV17A0A0B4J275 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV17A0A0B4J275 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.6■■□□□ 1.05
TRAV17A0A0B4J275 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV17A0A0B4J275 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV17A0A0B4J275 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV17A0A0B4J275 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV17A0A0B4J275 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAV17A0A0B4J275 AC010997.5-201ENST00000609182 354 ntBASIC21.59■■□□□ 1.05
TRAV17A0A0B4J275 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
TRAV17A0A0B4J275 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
TRAV17A0A0B4J275 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAV17A0A0B4J275 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV17A0A0B4J275 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV17A0A0B4J275 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV17A0A0B4J275 MTDHP2-201ENST00000601468 714 ntBASIC21.58■■□□□ 1.05
TRAV17A0A0B4J275 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.58■■□□□ 1.05
TRAV17A0A0B4J275 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
TRAV17A0A0B4J275 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
TRAV17A0A0B4J275 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
TRAV17A0A0B4J275 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.58■■□□□ 1.04
TRAV17A0A0B4J275 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.57■■□□□ 1.04
TRAV17A0A0B4J275 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.57■■□□□ 1.04
TRAV17A0A0B4J275 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.57■■□□□ 1.04
TRAV17A0A0B4J275 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.57■■□□□ 1.04
TRAV17A0A0B4J275 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.57■■□□□ 1.04
TRAV17A0A0B4J275 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.57■■□□□ 1.04
TRAV17A0A0B4J275 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.56■■□□□ 1.04
TRAV17A0A0B4J275 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRAV17A0A0B4J275 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.56■■□□□ 1.04
TRAV17A0A0B4J275 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.56■■□□□ 1.04
TRAV17A0A0B4J275 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.56■■□□□ 1.04
TRAV17A0A0B4J275 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.55■■□□□ 1.04
TRAV17A0A0B4J275 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV17A0A0B4J275 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV17A0A0B4J275 FOXO3B-201ENST00000395675 1928 ntBASIC21.55■■□□□ 1.04
TRAV17A0A0B4J275 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms