Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
SGCEO43556 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 AC079328.2-201ENST00000561241 3354 ntBASIC14.69□□□□□ -0.06
SGCEO43556 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.69□□□□□ -0.06
SGCEO43556 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.69□□□□□ -0.06
SGCEO43556 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC14.69□□□□□ -0.06
SGCEO43556 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC14.69□□□□□ -0.06
SGCEO43556 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
SGCEO43556 AC009078.2-202ENST00000463353 338 ntBASIC14.69□□□□□ -0.06
SGCEO43556 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14.69□□□□□ -0.06
SGCEO43556 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.69□□□□□ -0.06
SGCEO43556 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
SGCEO43556 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
SGCEO43556 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SGCEO43556 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.69□□□□□ -0.06
SGCEO43556 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.69□□□□□ -0.06
SGCEO43556 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC14.68□□□□□ -0.06
SGCEO43556 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SGCEO43556 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SGCEO43556 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
SGCEO43556 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
SGCEO43556 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 CSF3-203ENST00000394148 622 ntTSL 3 BASIC14.68□□□□□ -0.06
SGCEO43556 HCG4-201ENST00000418983 998 ntBASIC14.68□□□□□ -0.06
SGCEO43556 PMS2P1-201ENST00000431037 1228 ntBASIC14.68□□□□□ -0.06
SGCEO43556 PRSS29P-201ENST00000440800 595 ntBASIC14.68□□□□□ -0.06
SGCEO43556 RNA5SP419-201ENST00000515908 135 ntBASIC14.68□□□□□ -0.06
SGCEO43556 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 AC087641.1-201ENST00000557561 1021 ntBASIC14.68□□□□□ -0.06
SGCEO43556 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
SGCEO43556 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC14.68□□□□□ -0.06
SGCEO43556 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC14.68□□□□□ -0.06
SGCEO43556 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC14.68□□□□□ -0.06
SGCEO43556 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.68□□□□□ -0.06
SGCEO43556 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 CYP51A1P2-201ENST00000419457 1499 ntBASIC14.68□□□□□ -0.06
SGCEO43556 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.68□□□□□ -0.06
SGCEO43556 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.68□□□□□ -0.06
SGCEO43556 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.68□□□□□ -0.06
SGCEO43556 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
SGCEO43556 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SGCEO43556 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SGCEO43556 SLC22A20-204ENST00000530038 1673 ntBASIC14.68□□□□□ -0.06
SGCEO43556 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SGCEO43556 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SGCEO43556 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SGCEO43556 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SGCEO43556 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SGCEO43556 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
SGCEO43556 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SGCEO43556 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.67□□□□□ -0.06
SGCEO43556 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SGCEO43556 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SGCEO43556 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.67□□□□□ -0.06
SGCEO43556 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SGCEO43556 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SGCEO43556 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms