RNA–Protein interactions for RNA: ENST00000361339.9

IFT140-201, Transcript of intraflagellar transport 140, humanhuman

TSL 1 (best) BASIC

Gene IFT140, Length 2,987 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140-201ENST00000361339 NISCHQ9Y2I1 1504 aa33.67■■■□□ 2.98
IFT140-201ENST00000361339 SHROOM4Q9ULL8 1493 aa28.99■■■□□ 2.23
IFT140-201ENST00000361339 CCDC180Q9P1Z9 1646 aa28.48■■■□□ 2.15
IFT140-201ENST00000361339 ZCCHC6Q5VYS8 1495 aaKnown RBP28.43■■■□□ 2.14
IFT140-201ENST00000361339 DCAF8L2P0C7V8 631 aa28.34■■■□□ 2.13
IFT140-201ENST00000361339 SUPT5HO00267 1087 aaKnown RBP28.3■■■□□ 2.12
IFT140-201ENST00000361339 DCAF1Q9Y4B6 1507 aa27.41■■□□□ 1.98
IFT140-201ENST00000361339 CHIC1Q5VXU3 224 aa27.3■■□□□ 1.96
IFT140-201ENST00000361339 MYO15BQ96JP2 1530 aa27.26■■□□□ 1.95
IFT140-201ENST00000361339 SCRIBQ14160 1630 aa27.02■■□□□ 1.92
IFT140-201ENST00000361339 ABCC9O60706 1549 aa26.94■■□□□ 1.9
IFT140-201ENST00000361339 HRCP23327 699 aa26.81■■□□□ 1.88
IFT140-201ENST00000361339 PPARGC1BQ86YN6 1023 aaKnown RBP26.69■■□□□ 1.86
IFT140-201ENST00000361339 RSF1Q96T23 1441 aaPredicted RBP26.67■■□□□ 1.86
IFT140-201ENST00000361339 LOC105371045A0A1W2PR82 267 aa26.67■■□□□ 1.86
IFT140-201ENST00000361339 PCGF6Q9BYE7 350 aa26.62■■□□□ 1.85
IFT140-201ENST00000361339 CECR2Q9BXF3 1484 aa26.47■■□□□ 1.83
IFT140-201ENST00000361339 NACADO15069 1562 aa26.43■■□□□ 1.82
IFT140-201ENST00000361339 RB1CC1Q8TDY2 1594 aa26.42■■□□□ 1.82
IFT140-201ENST00000361339 MROH2BQ7Z745 1585 aa26.29■■□□□ 1.8
IFT140-201ENST00000361339 FAM9AQ8IZU1 332 aaPredicted RBP26.23■■□□□ 1.79
IFT140-201ENST00000361339 TRIM41Q8WV44 630 aa26.21■■□□□ 1.79
IFT140-201ENST00000361339 EHMT2Q96KQ7 1210 aa26.19■■□□□ 1.78
IFT140-201ENST00000361339 WIZO95785 1651 aa26.14■■□□□ 1.78
IFT140-201ENST00000361339 PABPN1Q86U42 306 aaKnown RBP eCLIP25.86■■□□□ 1.73
IFT140-201ENST00000361339 BAZ1AQ9NRL2 1556 aaPredicted RBP25.8■■□□□ 1.72
IFT140-201ENST00000361339 UNC13AQ9UPW8 1703 aa25.8■■□□□ 1.72
IFT140-201ENST00000361339 TRIM26Q12899 539 aaPredicted RBP25.71■■□□□ 1.71
IFT140-201ENST00000361339 SMARCA4P51532 1647 aa25.66■■□□□ 1.7
IFT140-201ENST00000361339 EIF4G1Q04637 1599 aaKnown RBP25.6■■□□□ 1.69
IFT140-201ENST00000361339 PELP1Q8IZL8 1130 aaKnown RBP25.6■■□□□ 1.69
IFT140-201ENST00000361339 CCDC88BA6NC98 1476 aa25.59■■□□□ 1.69
IFT140-201ENST00000361339 ABCC8Q09428 1581 aa25.58■■□□□ 1.69
IFT140-201ENST00000361339 TOP2AP11388 1531 aaKnown RBP25.57■■□□□ 1.68
IFT140-201ENST00000361339 BICRAQ9NZM4 1560 aa25.52■■□□□ 1.68
IFT140-201ENST00000361339 SCAF1Q9H7N4 1312 aaKnown RBP25.51■■□□□ 1.67
IFT140-201ENST00000361339 SMARCA2P51531 1590 aa25.5■■□□□ 1.67
IFT140-201ENST00000361339 SOGA1O94964 1423 aa25.32■■□□□ 1.64
IFT140-201ENST00000361339 TTBK1Q5TCY1 1321 aaPredicted RBP25.26■■□□□ 1.63
IFT140-201ENST00000361339 RUSC2Q8N2Y8 1516 aa25.25■■□□□ 1.63
IFT140-201ENST00000361339 ATAD2BQ9ULI0 1458 aa25.09■■□□□ 1.61
IFT140-201ENST00000361339 PEG3Q9GZU2 1588 aa25.05■■□□□ 1.6
IFT140-201ENST00000361339 ZEB1P37275 1124 aaPredicted RBP25.05■■□□□ 1.6
IFT140-201ENST00000361339 CSRNP3Q8WYN3 585 aa25.05■■□□□ 1.6
IFT140-201ENST00000361339 UBTFP17480 764 aaKnown RBP25.03■■□□□ 1.6
IFT140-201ENST00000361339 WRNQ14191 1432 aaPredicted RBP eCLIP25.02■■□□□ 1.6
IFT140-201ENST00000361339 CEP162Q5TB80 1403 aa25.02■■□□□ 1.6
IFT140-201ENST00000361339 BAZ1BQ9UIG0 1483 aaKnown RBP25■■□□□ 1.59
IFT140-201ENST00000361339 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.97■■□□□ 1.59
IFT140-201ENST00000361339 SYNJ1O43426 1573 aa24.96■■□□□ 1.59
IFT140-201ENST00000361339 TNIKQ9UKE5 1360 aa24.89■■□□□ 1.57
IFT140-201ENST00000361339 NEUROD1Q13562 356 aa24.87■■□□□ 1.57
IFT140-201ENST00000361339 RANGAP1P46060 587 aaPredicted RBP24.84■■□□□ 1.57
IFT140-201ENST00000361339 EEA1Q15075 1411 aa24.8■■□□□ 1.56
IFT140-201ENST00000361339 ACIN1Q9UKV3 1341 aaKnown RBP24.79■■□□□ 1.56
IFT140-201ENST00000361339 GTF3C3Q9Y5Q9 886 aa24.78■■□□□ 1.56
IFT140-201ENST00000361339 GOLGA3Q08378 1498 aa24.77■■□□□ 1.56
IFT140-201ENST00000361339 CCER1Q8TC90 406 aaPredicted RBP24.75■■□□□ 1.55
IFT140-201ENST00000361339 RAPGEF2Q9Y4G8 1499 aa24.65■■□□□ 1.54
IFT140-201ENST00000361339 CEP164Q9UPV0 1460 aa24.63■■□□□ 1.53
IFT140-201ENST00000361339 CLIP1P30622 1438 aa24.57■■□□□ 1.52
IFT140-201ENST00000361339 KIF21BO75037 1637 aa24.55■■□□□ 1.52
IFT140-201ENST00000361339 NCAPD3P42695 1498 aa24.54■■□□□ 1.52
IFT140-201ENST00000361339 TOP2BQ02880 1626 aa24.53■■□□□ 1.52
IFT140-201ENST00000361339 CENPBP07199 599 aaPredicted RBP24.48■■□□□ 1.51
IFT140-201ENST00000361339 DIEXFQ68CQ4 756 aaKnown RBP24.48■■□□□ 1.51
IFT140-201ENST00000361339 HNRNPUL2Q1KMD3 747 aaKnown RBP24.48■■□□□ 1.51
IFT140-201ENST00000361339 MYT1Q01538 1121 aa24.47■■□□□ 1.51
IFT140-201ENST00000361339 YTHDC1Q96MU7 727 aaKnown RBP24.46■■□□□ 1.51
IFT140-201ENST00000361339 HMGXB3Q12766 1538 aa24.46■■□□□ 1.51
IFT140-201ENST00000361339 CUX1P39880 1505 aa24.45■■□□□ 1.51
IFT140-201ENST00000361339 BIVM-ERCC5R4GMW8 1640 aa24.4■■□□□ 1.5
IFT140-201ENST00000361339 VPS8Q8N3P4 1428 aa24.38■■□□□ 1.49
IFT140-201ENST00000361339 CFTRP13569 1480 aa24.34■■□□□ 1.49
IFT140-201ENST00000361339 PRXQ9BXM0 1461 aa24.3■■□□□ 1.48
IFT140-201ENST00000361339 APLP2Q06481 763 aa24.29■■□□□ 1.48
IFT140-201ENST00000361339 KANK4Q5T7N3 995 aaPredicted RBP24.22■■□□□ 1.47
IFT140-201ENST00000361339 ARAP1Q96P48 1450 aa24.21■■□□□ 1.47
IFT140-201ENST00000361339 KIF27Q86VH2 1401 aa24.21■■□□□ 1.47
IFT140-201ENST00000361339 ERICH3Q5RHP9 1530 aa24.15■■□□□ 1.46
IFT140-201ENST00000361339 CADPSQ9ULU8 1353 aa24.14■■□□□ 1.45
IFT140-201ENST00000361339 CUX2O14529 1486 aa24.12■■□□□ 1.45
IFT140-201ENST00000361339 CC2D2AQ9P2K1 1620 aa24.12■■□□□ 1.45
IFT140-201ENST00000361339 IGF1RP08069 1367 aa24.06■■□□□ 1.44
IFT140-201ENST00000361339 FGD5Q6ZNL6 1462 aa24.04■■□□□ 1.44
IFT140-201ENST00000361339 ARHGAP35Q9NRY4 1499 aa24.03■■□□□ 1.44
IFT140-201ENST00000361339 NESP48681 1621 aa24■■□□□ 1.43
IFT140-201ENST00000361339 DNAJC5BQ9UF47 199 aa23.97■■□□□ 1.43
IFT140-201ENST00000361339 P3H3Q8IVL6 736 aa23.96■■□□□ 1.43
IFT140-201ENST00000361339 PRDM2Q13029 1718 aa23.96■■□□□ 1.43
IFT140-201ENST00000361339 ITGAEP38570 1179 aa23.96■■□□□ 1.43
IFT140-201ENST00000361339 ZNF316A6NFI3 1004 aaPredicted RBP23.95■■□□□ 1.42
IFT140-201ENST00000361339 CARMIL1Q5VZK9 1371 aa23.94■■□□□ 1.42
IFT140-201ENST00000361339 FANCD2Q9BXW9 1451 aa23.94■■□□□ 1.42
IFT140-201ENST00000361339 RAD54L2Q9Y4B4 1467 aa23.93■■□□□ 1.42
IFT140-201ENST00000361339 MIER1Q8N108 512 aa23.91■■□□□ 1.42
IFT140-201ENST00000361339 ATP1B4Q9UN42 357 aaPredicted RBP23.82■■□□□ 1.4
IFT140-201ENST00000361339 DHX57Q6P158 1386 aaKnown RBP23.81■■□□□ 1.4
IFT140-201ENST00000361339 POLA1P09884 1462 aaPredicted RBP23.77■■□□□ 1.4
IFT140-201ENST00000361339 RRBP1Q9P2E9 1410 aaKnown RBP23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms