Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 HLCS-207ENST00000612277 6112 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HMGB3O15347 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC13.36□□□□□ -0.27
HMGB3O15347 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC13.36□□□□□ -0.27
HMGB3O15347 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC13.36□□□□□ -0.27
HMGB3O15347 MTHFR-217ENST00000641820 1569 ntBASIC13.36□□□□□ -0.27
HMGB3O15347 ME2P1-201ENST00000426028 1970 ntBASIC13.36□□□□□ -0.27
HMGB3O15347 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HMGB3O15347 AKNA-202ENST00000307564 7380 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.35□□□□□ -0.27
HMGB3O15347 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC13.35□□□□□ -0.27
HMGB3O15347 USP40-201ENST00000251722 5692 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
HMGB3O15347 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC13.35□□□□□ -0.27
HMGB3O15347 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC13.35□□□□□ -0.27
HMGB3O15347 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
HMGB3O15347 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC13.35□□□□□ -0.27
HMGB3O15347 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.35□□□□□ -0.27
HMGB3O15347 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
HMGB3O15347 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
HMGB3O15347 AC012618.2-201ENST00000428058 849 ntBASIC13.35□□□□□ -0.27
HMGB3O15347 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC13.35□□□□□ -0.27
HMGB3O15347 KRT18P48-201ENST00000434763 852 ntBASIC13.35□□□□□ -0.27
HMGB3O15347 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC13.35□□□□□ -0.27
HMGB3O15347 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC13.35□□□□□ -0.27
HMGB3O15347 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC13.35□□□□□ -0.27
HMGB3O15347 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC13.35□□□□□ -0.27
HMGB3O15347 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC13.35□□□□□ -0.27
HMGB3O15347 NEK4P2-201ENST00000580004 1012 ntBASIC13.35□□□□□ -0.27
HMGB3O15347 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC13.35□□□□□ -0.27
HMGB3O15347 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC13.35□□□□□ -0.27
HMGB3O15347 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC13.35□□□□□ -0.27
HMGB3O15347 AC019129.2-201ENST00000609837 1235 ntBASIC13.35□□□□□ -0.27
HMGB3O15347 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC13.35□□□□□ -0.27
HMGB3O15347 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
HMGB3O15347 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC13.35□□□□□ -0.27
HMGB3O15347 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 AMT-206ENST00000458307 1860 ntTSL 2 BASIC13.35□□□□□ -0.27
HMGB3O15347 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.35□□□□□ -0.27
HMGB3O15347 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC13.35□□□□□ -0.27
HMGB3O15347 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
HMGB3O15347 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 PLEC-202ENST00000345136 14803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HMGB3O15347 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HMGB3O15347 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC13.34□□□□□ -0.27
HMGB3O15347 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC13.34□□□□□ -0.27
HMGB3O15347 AL357143.1-202ENST00000640531 5777 ntTSL 5 BASIC13.34□□□□□ -0.27
HMGB3O15347 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC13.34□□□□□ -0.27
HMGB3O15347 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 GFRA1-203ENST00000369236 9109 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
HMGB3O15347 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 AC006538.1-201ENST00000567905 1585 ntBASIC13.34□□□□□ -0.27
HMGB3O15347 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HMGB3O15347 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms