RNA–Protein interactions for RNA: ENST00000422392.6

CDH1-202, Transcript of cadherin 1, humanhuman

TSL 1 (best) BASIC

Gene CDH1, Length 2,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-202ENST00000422392 NISCHQ9Y2I1 1504 aa32.49■■■□□ 2.79
CDH1-202ENST00000422392 SHROOM4Q9ULL8 1493 aa28.01■■■□□ 2.07
CDH1-202ENST00000422392 CCDC180Q9P1Z9 1646 aa27.51■■■□□ 2
CDH1-202ENST00000422392 ZCCHC6Q5VYS8 1495 aaKnown RBP27.5■■□□□ 1.99
CDH1-202ENST00000422392 SUPT5HO00267 1087 aaKnown RBP27.49■■□□□ 1.99
CDH1-202ENST00000422392 DCAF8L2P0C7V8 631 aa27.13■■□□□ 1.93
CDH1-202ENST00000422392 MYO15BQ96JP2 1530 aa26.69■■□□□ 1.86
CDH1-202ENST00000422392 CHIC1Q5VXU3 224 aa26.68■■□□□ 1.86
CDH1-202ENST00000422392 DCAF1Q9Y4B6 1507 aa26.53■■□□□ 1.84
CDH1-202ENST00000422392 PCGF6Q9BYE7 350 aa26.05■■□□□ 1.76
CDH1-202ENST00000422392 HRCP23327 699 aa26.02■■□□□ 1.76
CDH1-202ENST00000422392 LOC105371045A0A1W2PR82 267 aa26.01■■□□□ 1.75
CDH1-202ENST00000422392 ABCC9O60706 1549 aa25.98■■□□□ 1.75
CDH1-202ENST00000422392 SCRIBQ14160 1630 aa25.98■■□□□ 1.75
CDH1-202ENST00000422392 RSF1Q96T23 1441 aaPredicted RBP25.79■■□□□ 1.72
CDH1-202ENST00000422392 PPARGC1BQ86YN6 1023 aaKnown RBP25.64■■□□□ 1.7
CDH1-202ENST00000422392 RB1CC1Q8TDY2 1594 aa25.62■■□□□ 1.69
CDH1-202ENST00000422392 TRIM41Q8WV44 630 aa25.51■■□□□ 1.67
CDH1-202ENST00000422392 CECR2Q9BXF3 1484 aa25.44■■□□□ 1.66
CDH1-202ENST00000422392 FAM9AQ8IZU1 332 aaPredicted RBP25.44■■□□□ 1.66
CDH1-202ENST00000422392 TRIM26Q12899 539 aaPredicted RBP25.41■■□□□ 1.66
CDH1-202ENST00000422392 NACADO15069 1562 aa25.4■■□□□ 1.66
CDH1-202ENST00000422392 MROH2BQ7Z745 1585 aa25.34■■□□□ 1.65
CDH1-202ENST00000422392 EHMT2Q96KQ7 1210 aa25.33■■□□□ 1.64
CDH1-202ENST00000422392 WIZO95785 1651 aa25.26■■□□□ 1.63
CDH1-202ENST00000422392 BAZ1AQ9NRL2 1556 aaPredicted RBP25■■□□□ 1.59
CDH1-202ENST00000422392 EIF4G1Q04637 1599 aaKnown RBP24.86■■□□□ 1.57
CDH1-202ENST00000422392 UNC13AQ9UPW8 1703 aa24.8■■□□□ 1.56
CDH1-202ENST00000422392 ZEB1P37275 1124 aaPredicted RBP24.8■■□□□ 1.56
CDH1-202ENST00000422392 ABCC8Q09428 1581 aa24.76■■□□□ 1.55
CDH1-202ENST00000422392 SMARCA4P51532 1647 aa24.76■■□□□ 1.55
CDH1-202ENST00000422392 TOP2AP11388 1531 aaKnown RBP24.74■■□□□ 1.55
CDH1-202ENST00000422392 CCDC88BA6NC98 1476 aa24.7■■□□□ 1.54
CDH1-202ENST00000422392 SMARCA2P51531 1590 aa24.66■■□□□ 1.54
CDH1-202ENST00000422392 PABPN1Q86U42 306 aaKnown RBP eCLIP24.53■■□□□ 1.52
CDH1-202ENST00000422392 TTBK1Q5TCY1 1321 aaPredicted RBP24.52■■□□□ 1.52
CDH1-202ENST00000422392 SOGA1O94964 1423 aa24.51■■□□□ 1.51
CDH1-202ENST00000422392 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.51■■□□□ 1.51
CDH1-202ENST00000422392 RUSC2Q8N2Y8 1516 aa24.42■■□□□ 1.5
CDH1-202ENST00000422392 CEP162Q5TB80 1403 aa24.41■■□□□ 1.5
CDH1-202ENST00000422392 BICRAQ9NZM4 1560 aa24.39■■□□□ 1.5
CDH1-202ENST00000422392 CCER1Q8TC90 406 aaPredicted RBP24.38■■□□□ 1.49
CDH1-202ENST00000422392 CSRNP3Q8WYN3 585 aa24.32■■□□□ 1.48
CDH1-202ENST00000422392 UBTFP17480 764 aaKnown RBP24.31■■□□□ 1.48
CDH1-202ENST00000422392 WRNQ14191 1432 aaPredicted RBP eCLIP24.31■■□□□ 1.48
CDH1-202ENST00000422392 TNIKQ9UKE5 1360 aa24.29■■□□□ 1.48
CDH1-202ENST00000422392 EEA1Q15075 1411 aa24.22■■□□□ 1.47
CDH1-202ENST00000422392 PEG3Q9GZU2 1588 aa24.18■■□□□ 1.46
CDH1-202ENST00000422392 GOLGA3Q08378 1498 aa24.15■■□□□ 1.46
CDH1-202ENST00000422392 SYNJ1O43426 1573 aa24.15■■□□□ 1.46
CDH1-202ENST00000422392 SCAF1Q9H7N4 1312 aaKnown RBP24.12■■□□□ 1.45
CDH1-202ENST00000422392 ATAD2BQ9ULI0 1458 aa24.08■■□□□ 1.44
CDH1-202ENST00000422392 BAZ1BQ9UIG0 1483 aaKnown RBP24.03■■□□□ 1.44
CDH1-202ENST00000422392 CEP164Q9UPV0 1460 aa23.99■■□□□ 1.43
CDH1-202ENST00000422392 KIF21BO75037 1637 aa23.96■■□□□ 1.43
CDH1-202ENST00000422392 DIEXFQ68CQ4 756 aaKnown RBP23.95■■□□□ 1.42
CDH1-202ENST00000422392 RANGAP1P46060 587 aaPredicted RBP23.95■■□□□ 1.42
CDH1-202ENST00000422392 CLIP1P30622 1438 aa23.92■■□□□ 1.42
CDH1-202ENST00000422392 RAPGEF2Q9Y4G8 1499 aa23.89■■□□□ 1.42
CDH1-202ENST00000422392 HNRNPUL2Q1KMD3 747 aaKnown RBP23.89■■□□□ 1.41
CDH1-202ENST00000422392 NEUROD1Q13562 356 aa23.82■■□□□ 1.4
CDH1-202ENST00000422392 VPS8Q8N3P4 1428 aa23.8■■□□□ 1.4
CDH1-202ENST00000422392 ACIN1Q9UKV3 1341 aaKnown RBP23.79■■□□□ 1.4
CDH1-202ENST00000422392 TOP2BQ02880 1626 aa23.78■■□□□ 1.4
CDH1-202ENST00000422392 APLP2Q06481 763 aa23.73■■□□□ 1.39
CDH1-202ENST00000422392 ZNF316A6NFI3 1004 aaPredicted RBP23.7■■□□□ 1.38
CDH1-202ENST00000422392 BIVM-ERCC5R4GMW8 1640 aa23.68■■□□□ 1.38
CDH1-202ENST00000422392 CENPBP07199 599 aaPredicted RBP23.59■■□□□ 1.37
CDH1-202ENST00000422392 GTF3C3Q9Y5Q9 886 aa23.58■■□□□ 1.37
CDH1-202ENST00000422392 CUX1P39880 1505 aa23.57■■□□□ 1.36
CDH1-202ENST00000422392 PRXQ9BXM0 1461 aa23.56■■□□□ 1.36
CDH1-202ENST00000422392 ERICH3Q5RHP9 1530 aa23.53■■□□□ 1.36
CDH1-202ENST00000422392 NCAPD3P42695 1498 aa23.53■■□□□ 1.36
CDH1-202ENST00000422392 ARAP1Q96P48 1450 aa23.53■■□□□ 1.36
CDH1-202ENST00000422392 HMGXB3Q12766 1538 aa23.53■■□□□ 1.36
CDH1-202ENST00000422392 YTHDC1Q96MU7 727 aaKnown RBP23.51■■□□□ 1.35
CDH1-202ENST00000422392 KANK4Q5T7N3 995 aaPredicted RBP23.49■■□□□ 1.35
CDH1-202ENST00000422392 PELP1Q8IZL8 1130 aaKnown RBP23.48■■□□□ 1.35
CDH1-202ENST00000422392 MIER1Q8N108 512 aa23.46■■□□□ 1.35
CDH1-202ENST00000422392 KIF27Q86VH2 1401 aa23.43■■□□□ 1.34
CDH1-202ENST00000422392 CFTRP13569 1480 aa23.4■■□□□ 1.34
CDH1-202ENST00000422392 DHX57Q6P158 1386 aaKnown RBP23.33■■□□□ 1.33
CDH1-202ENST00000422392 ARHGAP35Q9NRY4 1499 aa23.31■■□□□ 1.32
CDH1-202ENST00000422392 ITGAEP38570 1179 aa23.25■■□□□ 1.31
CDH1-202ENST00000422392 PRDM2Q13029 1718 aa23.25■■□□□ 1.31
CDH1-202ENST00000422392 RRBP1Q9P2E9 1410 aaKnown RBP23.25■■□□□ 1.31
CDH1-202ENST00000422392 CUX2O14529 1486 aa23.25■■□□□ 1.31
CDH1-202ENST00000422392 IGF1RP08069 1367 aa23.19■■□□□ 1.3
CDH1-202ENST00000422392 CLSPNQ9HAW4 1339 aa23.19■■□□□ 1.3
CDH1-202ENST00000422392 CCNB3Q8WWL7 1395 aa23.18■■□□□ 1.3
CDH1-202ENST00000422392 CADPSQ9ULU8 1353 aa23.13■■□□□ 1.29
CDH1-202ENST00000422392 FGD5Q6ZNL6 1462 aa23.13■■□□□ 1.29
CDH1-202ENST00000422392 CARMIL1Q5VZK9 1371 aa23.1■■□□□ 1.29
CDH1-202ENST00000422392 TIAM1Q13009 1591 aa23.06■■□□□ 1.28
CDH1-202ENST00000422392 P3H3Q8IVL6 736 aa23.05■■□□□ 1.28
CDH1-202ENST00000422392 RAB3GAP2Q9H2M9 1393 aa23.02■■□□□ 1.28
CDH1-202ENST00000422392 ATP1B4Q9UN42 357 aaPredicted RBP22.98■■□□□ 1.27
CDH1-202ENST00000422392 CC2D2AQ9P2K1 1620 aa22.98■■□□□ 1.27
CDH1-202ENST00000422392 LRRC9Q6ZRR7 1453 aa22.97■■□□□ 1.27
CDH1-202ENST00000422392 PHLDB1Q86UU1 1377 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms