RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 DCAF8L2P0C7V8 631 aa23.86■■□□□ 1.41
TRAF3-208ENST00000560371 NISCHQ9Y2I1 1504 aa22.47■■□□□ 1.19
TRAF3-208ENST00000560371 SUPT5HO00267 1087 aaKnown RBP22.25■■□□□ 1.15
TRAF3-208ENST00000560371 SHROOM4Q9ULL8 1493 aa21.92■■□□□ 1.1
TRAF3-208ENST00000560371 EHMT2Q96KQ7 1210 aa21.63■■□□□ 1.05
TRAF3-208ENST00000560371 APLP2Q06481 763 aa21.34■■□□□ 1.01
TRAF3-208ENST00000560371 FAM9AQ8IZU1 332 aaPredicted RBP21.3■■□□□ 1
TRAF3-208ENST00000560371 PELP1Q8IZL8 1130 aaKnown RBP20.85■□□□□ 0.93
TRAF3-208ENST00000560371 TTBK1Q5TCY1 1321 aaPredicted RBP20.84■□□□□ 0.93
TRAF3-208ENST00000560371 RANGAP1P46060 587 aaPredicted RBP20.81■□□□□ 0.92
TRAF3-208ENST00000560371 ATP1B4Q9UN42 357 aaPredicted RBP20.75■□□□□ 0.91
TRAF3-208ENST00000560371 TRIM41Q8WV44 630 aa20.65■□□□□ 0.9
TRAF3-208ENST00000560371 PCGF6Q9BYE7 350 aa20.54■□□□□ 0.88
TRAF3-208ENST00000560371 UBTFP17480 764 aaKnown RBP20.54■□□□□ 0.88
TRAF3-208ENST00000560371 CCER1Q8TC90 406 aaPredicted RBP20.32■□□□□ 0.84
TRAF3-208ENST00000560371 ERICH6Q7L0X2 663 aa20.17■□□□□ 0.82
TRAF3-208ENST00000560371 ZEB1P37275 1124 aaPredicted RBP20.15■□□□□ 0.82
TRAF3-208ENST00000560371 MYT1LQ9UL68 1186 aa20.12■□□□□ 0.81
TRAF3-208ENST00000560371 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.07■□□□□ 0.8
TRAF3-208ENST00000560371 HNRNPUL2Q1KMD3 747 aaKnown RBP20.07■□□□□ 0.8
TRAF3-208ENST00000560371 CENPBP07199 599 aaPredicted RBP20.05■□□□□ 0.8
TRAF3-208ENST00000560371 PPARGC1BQ86YN6 1023 aaKnown RBP19.95■□□□□ 0.78
TRAF3-208ENST00000560371 ITGAEP38570 1179 aa19.84■□□□□ 0.77
TRAF3-208ENST00000560371 NEFLP07196 543 aa19.83■□□□□ 0.77
TRAF3-208ENST00000560371 ABCC9O60706 1549 aa19.75■□□□□ 0.75
TRAF3-208ENST00000560371 POLR3GLQ9BT43 218 aa19.71■□□□□ 0.75
TRAF3-208ENST00000560371 CHIC1Q5VXU3 224 aa19.71■□□□□ 0.75
TRAF3-208ENST00000560371 YTHDC1Q96MU7 727 aaKnown RBP19.68■□□□□ 0.74
TRAF3-208ENST00000560371 PABPN1Q86U42 306 aaKnown RBP eCLIP19.66■□□□□ 0.74
TRAF3-208ENST00000560371 MYT1Q01538 1121 aa19.64■□□□□ 0.73
TRAF3-208ENST00000560371 TRIM26Q12899 539 aaPredicted RBP19.63■□□□□ 0.73
TRAF3-208ENST00000560371 LOC105371045A0A1W2PR82 267 aa19.53■□□□□ 0.72
TRAF3-208ENST00000560371 SLC4A1APQ9BWU0 796 aaKnown RBP19.52■□□□□ 0.72
TRAF3-208ENST00000560371 CNGB1Q14028 1251 aaPredicted RBP19.48■□□□□ 0.71
TRAF3-208ENST00000560371 FBLN2P98095 1184 aa19.38■□□□□ 0.69
TRAF3-208ENST00000560371 FAM50AQ14320 339 aaKnown RBP19.36■□□□□ 0.69
TRAF3-208ENST00000560371 DAXXQ9UER7 740 aaPredicted RBP19.34■□□□□ 0.69
TRAF3-208ENST00000560371 TRIM52Q96A61 297 aa19.26■□□□□ 0.67
TRAF3-208ENST00000560371 HRCP23327 699 aa19.21■□□□□ 0.67
TRAF3-208ENST00000560371 NEUROD1Q13562 356 aa19.07■□□□□ 0.64
TRAF3-208ENST00000560371 CLSPNQ9HAW4 1339 aa19.03■□□□□ 0.64
TRAF3-208ENST00000560371 BCANQ96GW7 911 aa19.02■□□□□ 0.64
TRAF3-208ENST00000560371 ZNF326Q5BKZ1 582 aaKnown RBP19.02■□□□□ 0.64
TRAF3-208ENST00000560371 P3H3Q8IVL6 736 aa18.96■□□□□ 0.63
TRAF3-208ENST00000560371 ARID3CA6NKF2 412 aa18.95■□□□□ 0.62
TRAF3-208ENST00000560371 DIEXFQ68CQ4 756 aaKnown RBP18.91■□□□□ 0.62
TRAF3-208ENST00000560371 SCRIBQ14160 1630 aa18.9■□□□□ 0.62
TRAF3-208ENST00000560371 SLC24A1O60721 1099 aa18.9■□□□□ 0.62
TRAF3-208ENST00000560371 ESF1Q9H501 851 aaKnown RBP18.88■□□□□ 0.61
TRAF3-208ENST00000560371 CDK11AQ9UQ88 783 aaPredicted RBP18.86■□□□□ 0.61
TRAF3-208ENST00000560371 ZNF777Q9ULD5 760 aaPredicted RBP18.85■□□□□ 0.61
TRAF3-208ENST00000560371 ZNF316A6NFI3 1004 aaPredicted RBP18.83■□□□□ 0.6
TRAF3-208ENST00000560371 ZBTB47Q9UFB7 747 aaPredicted RBP18.81■□□□□ 0.6
TRAF3-208ENST00000560371 NPM1P06748 294 aaKnown RBP eCLIP18.8■□□□□ 0.6
TRAF3-208ENST00000560371 NEFMP07197 916 aa18.8■□□□□ 0.6
TRAF3-208ENST00000560371 ANP32CO43423 234 aa18.78■□□□□ 0.6
TRAF3-208ENST00000560371 CSRNP3Q8WYN3 585 aa18.78■□□□□ 0.6
TRAF3-208ENST00000560371 STAG3Q9UJ98 1225 aa18.71■□□□□ 0.59
TRAF3-208ENST00000560371 PLPPR3Q6T4P5 718 aa18.7■□□□□ 0.58
TRAF3-208ENST00000560371 BCL11AQ9H165 835 aa18.65■□□□□ 0.58
TRAF3-208ENST00000560371 CANXP27824 592 aaKnown RBP18.64■□□□□ 0.57
TRAF3-208ENST00000560371 CCDC180Q9P1Z9 1646 aa18.64■□□□□ 0.57
TRAF3-208ENST00000560371 CHGAP10645 457 aaKnown RBP18.64■□□□□ 0.57
TRAF3-208ENST00000560371 RTL5Q5HYW3 569 aaPredicted RBP18.63■□□□□ 0.57
TRAF3-208ENST00000560371 CHMP7Q8WUX9 453 aaPredicted RBP18.51■□□□□ 0.55
TRAF3-208ENST00000560371 RB1CC1Q8TDY2 1594 aa18.47■□□□□ 0.55
TRAF3-208ENST00000560371 ZCCHC6Q5VYS8 1495 aaKnown RBP18.46■□□□□ 0.55
TRAF3-208ENST00000560371 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.46■□□□□ 0.55
TRAF3-208ENST00000560371 TONSLQ96HA7 1378 aa18.43■□□□□ 0.54
TRAF3-208ENST00000560371 TSPY4P0CV99 314 aa18.41■□□□□ 0.54
TRAF3-208ENST00000560371 TSPY10P0CW01 314 aa18.41■□□□□ 0.54
TRAF3-208ENST00000560371 CHIC2Q9UKJ5 165 aa18.37■□□□□ 0.53
TRAF3-208ENST00000560371 MTUS2Q5JR59 1369 aa18.33■□□□□ 0.52
TRAF3-208ENST00000560371 SCAF1Q9H7N4 1312 aaKnown RBP18.29■□□□□ 0.52
TRAF3-208ENST00000560371 GTF3C3Q9Y5Q9 886 aa18.26■□□□□ 0.51
TRAF3-208ENST00000560371 KCNH8Q96L42 1107 aa18.25■□□□□ 0.51
TRAF3-208ENST00000560371 KDM2AQ9Y2K7 1162 aa18.25■□□□□ 0.51
TRAF3-208ENST00000560371 NACADO15069 1562 aa18.19■□□□□ 0.5
TRAF3-208ENST00000560371 TMC1Q8TDI8 760 aa18.18■□□□□ 0.5
TRAF3-208ENST00000560371 SALL2Q9Y467 1007 aaPredicted RBP18.18■□□□□ 0.5
TRAF3-208ENST00000560371 A0A0G2JS52 829 aa18.18■□□□□ 0.5
TRAF3-208ENST00000560371 PLEKHD1A6NEE1 506 aa18.17■□□□□ 0.5
TRAF3-208ENST00000560371 FAM9BQ8IZU0 186 aa18.16■□□□□ 0.5
TRAF3-208ENST00000560371 DDX10Q13206 875 aaKnown RBP18.16■□□□□ 0.5
TRAF3-208ENST00000560371 PPP1R15AO75807 674 aaPredicted RBP18.16■□□□□ 0.5
TRAF3-208ENST00000560371 ERCC6Q03468 1493 aa18.15■□□□□ 0.5
TRAF3-208ENST00000560371 C14orf37Q86TY3 774 aa18.15■□□□□ 0.5
TRAF3-208ENST00000560371 ARID4BQ4LE39 1312 aaPredicted RBP18.15■□□□□ 0.5
TRAF3-208ENST00000560371 ANP32AP39687 249 aaKnown RBP18.14■□□□□ 0.49
TRAF3-208ENST00000560371 BAZ1BQ9UIG0 1483 aaKnown RBP18.14■□□□□ 0.49
TRAF3-208ENST00000560371 HNRNPUQ00839 825 aaKnown RBP eCLIP18.13■□□□□ 0.49
TRAF3-208ENST00000560371 SENP3Q9H4L4 574 aaPredicted RBP18.13■□□□□ 0.49
TRAF3-208ENST00000560371 HSP90AA1P07900 732 aaKnown RBP18.13■□□□□ 0.49
TRAF3-208ENST00000560371 WDR43Q15061 677 aaKnown RBP eCLIP18.12■□□□□ 0.49
TRAF3-208ENST00000560371 NPM2Q86SE8 214 aaKnown RBP18.11■□□□□ 0.49
TRAF3-208ENST00000560371 PLEKHG5O94827 1062 aa18.11■□□□□ 0.49
TRAF3-208ENST00000560371 CLIP1P30622 1438 aa18.09■□□□□ 0.49
TRAF3-208ENST00000560371 UPF2Q9HAU5 1272 aaKnown RBP18.08■□□□□ 0.49
TRAF3-208ENST00000560371 RSF1Q96T23 1441 aaPredicted RBP18.08■□□□□ 0.48
TRAF3-208ENST00000560371 RRP7BPQ9NSQ0 103 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms