Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS4Q9NQG7 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS4Q9NQG7 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS4Q9NQG7 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HPS4Q9NQG7 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HPS4Q9NQG7 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HPS4Q9NQG7 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 MRPS18AP1-201ENST00000414458 589 ntBASIC17.1■□□□□ 0.33
HPS4Q9NQG7 AC241585.1-201ENST00000433527 519 ntBASIC17.1■□□□□ 0.33
HPS4Q9NQG7 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 LINC02012-201ENST00000608206 1725 ntBASIC17.1■□□□□ 0.33
HPS4Q9NQG7 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS4Q9NQG7 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 AC073592.8-201ENST00000624126 511 ntBASIC17.09■□□□□ 0.33
HPS4Q9NQG7 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HPS4Q9NQG7 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.08■□□□□ 0.33
HPS4Q9NQG7 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
HPS4Q9NQG7 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HPS4Q9NQG7 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
HPS4Q9NQG7 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.08■□□□□ 0.33
HPS4Q9NQG7 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HPS4Q9NQG7 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
HPS4Q9NQG7 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HPS4Q9NQG7 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
HPS4Q9NQG7 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.08■□□□□ 0.33
HPS4Q9NQG7 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.08■□□□□ 0.33
HPS4Q9NQG7 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 AC100757.3-201ENST00000622361 1406 ntBASIC17.08■□□□□ 0.32
HPS4Q9NQG7 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 TSSK5P-201ENST00000423978 907 ntBASIC17.08■□□□□ 0.32
HPS4Q9NQG7 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 AC003101.2-201ENST00000612557 442 ntBASIC17.08■□□□□ 0.32
HPS4Q9NQG7 SPDYE12P-201ENST00000618416 771 ntBASIC17.08■□□□□ 0.32
HPS4Q9NQG7 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 AL035252.4-201ENST00000624174 288 ntBASIC17.08■□□□□ 0.32
HPS4Q9NQG7 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 CROCCP2-202ENST00000412962 2773 ntBASIC17.08■□□□□ 0.32
HPS4Q9NQG7 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HPS4Q9NQG7 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HPS4Q9NQG7 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS4Q9NQG7 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms