RNA–Protein interactions for RNA: ENST00000590574.5

SMARCA4-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,282 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-215ENST00000590574 NISCHQ9Y2I1 1504 aa31.33■■■□□ 2.61
SMARCA4-215ENST00000590574 DCAF8L2P0C7V8 631 aa29.45■■■□□ 2.31
SMARCA4-215ENST00000590574 SUPT5HO00267 1087 aaKnown RBP29.02■■■□□ 2.24
SMARCA4-215ENST00000590574 SHROOM4Q9ULL8 1493 aa28.96■■■□□ 2.23
SMARCA4-215ENST00000590574 PCGF6Q9BYE7 350 aa27.47■■□□□ 1.99
SMARCA4-215ENST00000590574 EHMT2Q96KQ7 1210 aa27.47■■□□□ 1.99
SMARCA4-215ENST00000590574 FAM9AQ8IZU1 332 aaPredicted RBP27.13■■□□□ 1.93
SMARCA4-215ENST00000590574 CHIC1Q5VXU3 224 aa26.91■■□□□ 1.9
SMARCA4-215ENST00000590574 TRIM41Q8WV44 630 aa26.89■■□□□ 1.89
SMARCA4-215ENST00000590574 HRCP23327 699 aa26.76■■□□□ 1.88
SMARCA4-215ENST00000590574 ZEB1P37275 1124 aaPredicted RBP26.62■■□□□ 1.85
SMARCA4-215ENST00000590574 LOC105371045A0A1W2PR82 267 aa26.61■■□□□ 1.85
SMARCA4-215ENST00000590574 TTBK1Q5TCY1 1321 aaPredicted RBP26.6■■□□□ 1.85
SMARCA4-215ENST00000590574 TRIM26Q12899 539 aaPredicted RBP26.51■■□□□ 1.83
SMARCA4-215ENST00000590574 APLP2Q06481 763 aa26.37■■□□□ 1.81
SMARCA4-215ENST00000590574 CCER1Q8TC90 406 aaPredicted RBP26.34■■□□□ 1.81
SMARCA4-215ENST00000590574 PPARGC1BQ86YN6 1023 aaKnown RBP26.31■■□□□ 1.8
SMARCA4-215ENST00000590574 ZCCHC6Q5VYS8 1495 aaKnown RBP26.24■■□□□ 1.79
SMARCA4-215ENST00000590574 UBTFP17480 764 aaKnown RBP26.11■■□□□ 1.77
SMARCA4-215ENST00000590574 RANGAP1P46060 587 aaPredicted RBP26.08■■□□□ 1.76
SMARCA4-215ENST00000590574 CENPBP07199 599 aaPredicted RBP26.02■■□□□ 1.76
SMARCA4-215ENST00000590574 CCDC180Q9P1Z9 1646 aa25.9■■□□□ 1.74
SMARCA4-215ENST00000590574 PELP1Q8IZL8 1130 aaKnown RBP25.84■■□□□ 1.73
SMARCA4-215ENST00000590574 MYO15BQ96JP2 1530 aa25.72■■□□□ 1.71
SMARCA4-215ENST00000590574 ABCC9O60706 1549 aa25.68■■□□□ 1.7
SMARCA4-215ENST00000590574 YTHDC1Q96MU7 727 aaKnown RBP25.68■■□□□ 1.7
SMARCA4-215ENST00000590574 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.65■■□□□ 1.7
SMARCA4-215ENST00000590574 DCAF1Q9Y4B6 1507 aa25.6■■□□□ 1.69
SMARCA4-215ENST00000590574 SCRIBQ14160 1630 aa25.51■■□□□ 1.67
SMARCA4-215ENST00000590574 HNRNPUL2Q1KMD3 747 aaKnown RBP25.44■■□□□ 1.66
SMARCA4-215ENST00000590574 ATP1B4Q9UN42 357 aaPredicted RBP25.44■■□□□ 1.66
SMARCA4-215ENST00000590574 DIEXFQ68CQ4 756 aaKnown RBP25.35■■□□□ 1.65
SMARCA4-215ENST00000590574 PABPN1Q86U42 306 aaKnown RBP eCLIP25.24■■□□□ 1.63
SMARCA4-215ENST00000590574 ITGAEP38570 1179 aa25.18■■□□□ 1.62
SMARCA4-215ENST00000590574 RSF1Q96T23 1441 aaPredicted RBP25.11■■□□□ 1.61
SMARCA4-215ENST00000590574 CSRNP3Q8WYN3 585 aa25.01■■□□□ 1.59
SMARCA4-215ENST00000590574 GTF3C3Q9Y5Q9 886 aa24.96■■□□□ 1.59
SMARCA4-215ENST00000590574 NEFLP07196 543 aa24.94■■□□□ 1.58
SMARCA4-215ENST00000590574 MYT1Q01538 1121 aa24.92■■□□□ 1.58
SMARCA4-215ENST00000590574 ZNF316A6NFI3 1004 aaPredicted RBP24.9■■□□□ 1.58
SMARCA4-215ENST00000590574 ACIN1Q9UKV3 1341 aaKnown RBP24.87■■□□□ 1.57
SMARCA4-215ENST00000590574 ERICH6Q7L0X2 663 aa24.76■■□□□ 1.55
SMARCA4-215ENST00000590574 RB1CC1Q8TDY2 1594 aa24.73■■□□□ 1.55
SMARCA4-215ENST00000590574 FAM50AQ14320 339 aaKnown RBP24.66■■□□□ 1.54
SMARCA4-215ENST00000590574 NACADO15069 1562 aa24.62■■□□□ 1.53
SMARCA4-215ENST00000590574 SCAF1Q9H7N4 1312 aaKnown RBP24.61■■□□□ 1.53
SMARCA4-215ENST00000590574 CECR2Q9BXF3 1484 aa24.59■■□□□ 1.53
SMARCA4-215ENST00000590574 NEUROD1Q13562 356 aa24.55■■□□□ 1.52
SMARCA4-215ENST00000590574 CEP162Q5TB80 1403 aa24.52■■□□□ 1.52
SMARCA4-215ENST00000590574 MROH2BQ7Z745 1585 aa24.38■■□□□ 1.49
SMARCA4-215ENST00000590574 EEA1Q15075 1411 aa24.38■■□□□ 1.49
SMARCA4-215ENST00000590574 GOLGA3Q08378 1498 aa24.37■■□□□ 1.49
SMARCA4-215ENST00000590574 CLIP1P30622 1438 aa24.36■■□□□ 1.49
SMARCA4-215ENST00000590574 BAZ1AQ9NRL2 1556 aaPredicted RBP24.35■■□□□ 1.49
SMARCA4-215ENST00000590574 POLR3GLQ9BT43 218 aa24.34■■□□□ 1.49
SMARCA4-215ENST00000590574 TNIKQ9UKE5 1360 aa24.34■■□□□ 1.49
SMARCA4-215ENST00000590574 P3H3Q8IVL6 736 aa24.34■■□□□ 1.49
SMARCA4-215ENST00000590574 BCANQ96GW7 911 aa24.32■■□□□ 1.48
SMARCA4-215ENST00000590574 WRNQ14191 1432 aaPredicted RBP eCLIP24.28■■□□□ 1.485e-6■■□□□ 12.5
SMARCA4-215ENST00000590574 CNGB1Q14028 1251 aaPredicted RBP24.26■■□□□ 1.47
SMARCA4-215ENST00000590574 MIER1Q8N108 512 aa24.26■■□□□ 1.47
SMARCA4-215ENST00000590574 TRIM52Q96A61 297 aa24.24■■□□□ 1.47
SMARCA4-215ENST00000590574 ANP32CO43423 234 aa24.23■■□□□ 1.47
SMARCA4-215ENST00000590574 SOGA1O94964 1423 aa24.21■■□□□ 1.47
SMARCA4-215ENST00000590574 WIZO95785 1651 aa24.16■■□□□ 1.46
SMARCA4-215ENST00000590574 ABCC8Q09428 1581 aa24.16■■□□□ 1.46
SMARCA4-215ENST00000590574 CEP164Q9UPV0 1460 aa24.13■■□□□ 1.45
SMARCA4-215ENST00000590574 CCDC88BA6NC98 1476 aa24.11■■□□□ 1.45
SMARCA4-215ENST00000590574 BAZ1BQ9UIG0 1483 aaKnown RBP24.05■■□□□ 1.44
SMARCA4-215ENST00000590574 CLSPNQ9HAW4 1339 aa24.01■■□□□ 1.43
SMARCA4-215ENST00000590574 DDX10Q13206 875 aaKnown RBP23.99■■□□□ 1.43
SMARCA4-215ENST00000590574 TOP2AP11388 1531 aaKnown RBP23.93■■□□□ 1.42
SMARCA4-215ENST00000590574 ARID3CA6NKF2 412 aa23.93■■□□□ 1.42
SMARCA4-215ENST00000590574 TONSLQ96HA7 1378 aa23.9■■□□□ 1.42
SMARCA4-215ENST00000590574 FKBP8Q14318 412 aa23.9■■□□□ 1.42
SMARCA4-215ENST00000590574 ZNF326Q5BKZ1 582 aaKnown RBP23.88■■□□□ 1.41
SMARCA4-215ENST00000590574 CDK11AQ9UQ88 783 aaPredicted RBP23.83■■□□□ 1.41
SMARCA4-215ENST00000590574 KIF27Q86VH2 1401 aa23.82■■□□□ 1.4
SMARCA4-215ENST00000590574 VPS8Q8N3P4 1428 aa23.8■■□□□ 1.4
SMARCA4-215ENST00000590574 HIRIP3Q9BW71 556 aaPredicted RBP23.77■■□□□ 1.4
SMARCA4-215ENST00000590574 MYT1LQ9UL68 1186 aa23.75■■□□□ 1.39
SMARCA4-215ENST00000590574 SMARCA4P51532 1647 aa23.7■■□□□ 1.38
SMARCA4-215ENST00000590574 CHIC2Q9UKJ5 165 aa23.7■■□□□ 1.38
SMARCA4-215ENST00000590574 HNRNPUQ00839 825 aaKnown RBP eCLIP23.69■■□□□ 1.38
SMARCA4-215ENST00000590574 RUSC2Q8N2Y8 1516 aa23.69■■□□□ 1.38
SMARCA4-215ENST00000590574 MTUS2Q5JR59 1369 aa23.68■■□□□ 1.38
SMARCA4-215ENST00000590574 FBLN2P98095 1184 aa23.68■■□□□ 1.38
SMARCA4-215ENST00000590574 DAXXQ9UER7 740 aaPredicted RBP23.68■■□□□ 1.38
SMARCA4-215ENST00000590574 CCNB3Q8WWL7 1395 aa23.63■■□□□ 1.37
SMARCA4-215ENST00000590574 KANK4Q5T7N3 995 aaPredicted RBP23.63■■□□□ 1.37
SMARCA4-215ENST00000590574 ZNF777Q9ULD5 760 aaPredicted RBP23.62■■□□□ 1.37
SMARCA4-215ENST00000590574 SIN3AQ96ST3 1273 aa23.58■■□□□ 1.37
SMARCA4-215ENST00000590574 RTL5Q5HYW3 569 aaPredicted RBP23.56■■□□□ 1.36
SMARCA4-215ENST00000590574 FAM9BQ8IZU0 186 aa23.56■■□□□ 1.36
SMARCA4-215ENST00000590574 SMARCA2P51531 1590 aa23.55■■□□□ 1.36
SMARCA4-215ENST00000590574 RAPGEF2Q9Y4G8 1499 aa23.53■■□□□ 1.36
SMARCA4-215ENST00000590574 RRP7BPQ9NSQ0 103 aa23.51■■□□□ 1.35
SMARCA4-215ENST00000590574 CUX2O14529 1486 aa23.49■■□□□ 1.35
SMARCA4-215ENST00000590574 SUPT16HQ9Y5B9 1047 aaKnown RBP23.49■■□□□ 1.35
SMARCA4-215ENST00000590574 CARMIL1Q5VZK9 1371 aa23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms