RNA–Protein interactions for RNA: ENST00000438826.7

TVP23C-204, Transcript of trans-golgi network vesicle protein 23 homolog C, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene TVP23C, Length 1,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23C-204ENST00000438826 NISCHQ9Y2I1 1504 aa38.41■■■■□ 3.74
TVP23C-204ENST00000438826 CCDC180Q9P1Z9 1646 aa33.23■■■□□ 2.91
TVP23C-204ENST00000438826 ZCCHC6Q5VYS8 1495 aaKnown RBP32.33■■■□□ 2.77
TVP23C-204ENST00000438826 DCAF1Q9Y4B6 1507 aa31.72■■■□□ 2.67
TVP23C-204ENST00000438826 DCAF8L2P0C7V8 631 aa31.72■■■□□ 2.67
TVP23C-204ENST00000438826 SHROOM4Q9ULL8 1493 aa31.69■■■□□ 2.66
TVP23C-204ENST00000438826 MYO15BQ96JP2 1530 aa31.2■■■□□ 2.59
TVP23C-204ENST00000438826 ABCC9O60706 1549 aa31.19■■■□□ 2.58
TVP23C-204ENST00000438826 NACADO15069 1562 aa30.91■■■□□ 2.54
TVP23C-204ENST00000438826 SUPT5HO00267 1087 aaKnown RBP30.71■■■□□ 2.51
TVP23C-204ENST00000438826 SCRIBQ14160 1630 aa30.69■■■□□ 2.5
TVP23C-204ENST00000438826 RB1CC1Q8TDY2 1594 aa30.56■■■□□ 2.48
TVP23C-204ENST00000438826 RSF1Q96T23 1441 aaPredicted RBP29.98■■■□□ 2.39
TVP23C-204ENST00000438826 UNC13AQ9UPW8 1703 aa29.92■■■□□ 2.38
TVP23C-204ENST00000438826 CECR2Q9BXF3 1484 aa29.84■■■□□ 2.37
TVP23C-204ENST00000438826 MROH2BQ7Z745 1585 aa29.7■■■□□ 2.35
TVP23C-204ENST00000438826 BICRAQ9NZM4 1560 aa29.63■■■□□ 2.33
TVP23C-204ENST00000438826 BAZ1AQ9NRL2 1556 aaPredicted RBP29.62■■■□□ 2.33
TVP23C-204ENST00000438826 CHIC1Q5VXU3 224 aa29.57■■■□□ 2.32
TVP23C-204ENST00000438826 PABPN1Q86U42 306 aaKnown RBP eCLIP29.55■■■□□ 2.32
TVP23C-204ENST00000438826 WIZO95785 1651 aa29.47■■■□□ 2.31
TVP23C-204ENST00000438826 SMARCA4P51532 1647 aa29.42■■■□□ 2.3
TVP23C-204ENST00000438826 TOP2AP11388 1531 aaKnown RBP29.16■■■□□ 2.26
TVP23C-204ENST00000438826 PEG3Q9GZU2 1588 aa29.04■■■□□ 2.24
TVP23C-204ENST00000438826 CCDC88BA6NC98 1476 aa28.91■■■□□ 2.22
TVP23C-204ENST00000438826 SMARCA2P51531 1590 aa28.9■■■□□ 2.22
TVP23C-204ENST00000438826 ATAD2BQ9ULI0 1458 aa28.88■■■□□ 2.21
TVP23C-204ENST00000438826 TRIM41Q8WV44 630 aa28.83■■■□□ 2.21
TVP23C-204ENST00000438826 EIF4G1Q04637 1599 aaKnown RBP28.79■■■□□ 2.2
TVP23C-204ENST00000438826 BAZ1BQ9UIG0 1483 aaKnown RBP28.74■■■□□ 2.19
TVP23C-204ENST00000438826 NCAPD3P42695 1498 aa28.56■■■□□ 2.16
TVP23C-204ENST00000438826 HMGXB3Q12766 1538 aa28.52■■■□□ 2.16
TVP23C-204ENST00000438826 LOC105371045A0A1W2PR82 267 aa28.49■■■□□ 2.15
TVP23C-204ENST00000438826 ABCC8Q09428 1581 aa28.42■■■□□ 2.14
TVP23C-204ENST00000438826 FAM9AQ8IZU1 332 aaPredicted RBP28.34■■■□□ 2.13
TVP23C-204ENST00000438826 WRNQ14191 1432 aaPredicted RBP eCLIP28.21■■■□□ 2.11
TVP23C-204ENST00000438826 CC2D2AQ9P2K1 1620 aa28.2■■■□□ 2.11
TVP23C-204ENST00000438826 SYNJ1O43426 1573 aa28.04■■■□□ 2.08
TVP23C-204ENST00000438826 CFTRP13569 1480 aa28.04■■■□□ 2.08
TVP23C-204ENST00000438826 SOGA1O94964 1423 aa28■■■□□ 2.07
TVP23C-204ENST00000438826 EEA1Q15075 1411 aa27.99■■■□□ 2.07
TVP23C-204ENST00000438826 EHMT2Q96KQ7 1210 aa27.95■■■□□ 2.06
TVP23C-204ENST00000438826 TOP2BQ02880 1626 aa27.89■■■□□ 2.06
TVP23C-204ENST00000438826 CADPSQ9ULU8 1353 aa27.88■■■□□ 2.05
TVP23C-204ENST00000438826 RUSC2Q8N2Y8 1516 aa27.86■■■□□ 2.05
TVP23C-204ENST00000438826 CSRNP3Q8WYN3 585 aa27.85■■■□□ 2.05
TVP23C-204ENST00000438826 BIVM-ERCC5R4GMW8 1640 aa27.83■■■□□ 2.05
TVP23C-204ENST00000438826 PRDM2Q13029 1718 aa27.82■■■□□ 2.04
TVP23C-204ENST00000438826 CUX1P39880 1505 aa27.74■■■□□ 2.03
TVP23C-204ENST00000438826 TNIKQ9UKE5 1360 aa27.63■■■□□ 2.01
TVP23C-204ENST00000438826 GOLGA3Q08378 1498 aa27.63■■■□□ 2.01
TVP23C-204ENST00000438826 PCGF6Q9BYE7 350 aa27.6■■■□□ 2.01
TVP23C-204ENST00000438826 CEP164Q9UPV0 1460 aa27.59■■■□□ 2.01
TVP23C-204ENST00000438826 KIF21BO75037 1637 aa27.57■■■□□ 2
TVP23C-204ENST00000438826 FANCD2Q9BXW9 1451 aa27.56■■■□□ 2
TVP23C-204ENST00000438826 UBTFP17480 764 aaKnown RBP27.56■■■□□ 2
TVP23C-204ENST00000438826 CEP162Q5TB80 1403 aa27.51■■□□□ 1.99
TVP23C-204ENST00000438826 NESP48681 1621 aa27.5■■□□□ 1.99
TVP23C-204ENST00000438826 LAMC3Q9Y6N6 1575 aa27.49■■□□□ 1.99
TVP23C-204ENST00000438826 TRIM26Q12899 539 aaPredicted RBP27.48■■□□□ 1.99
TVP23C-204ENST00000438826 KIF27Q86VH2 1401 aa27.46■■□□□ 1.99
TVP23C-204ENST00000438826 DNAJC5BQ9UF47 199 aa27.44■■□□□ 1.98
TVP23C-204ENST00000438826 RAPGEF2Q9Y4G8 1499 aa27.4■■□□□ 1.98
TVP23C-204ENST00000438826 FGD5Q6ZNL6 1462 aa27.39■■□□□ 1.97
TVP23C-204ENST00000438826 PRXQ9BXM0 1461 aa27.36■■□□□ 1.97
TVP23C-204ENST00000438826 DNMBPQ6XZF7 1577 aa27.35■■□□□ 1.97
TVP23C-204ENST00000438826 ERICH3Q5RHP9 1530 aa27.33■■□□□ 1.97
TVP23C-204ENST00000438826 PDS5BQ9NTI5 1447 aa27.32■■□□□ 1.96
TVP23C-204ENST00000438826 CUX2O14529 1486 aa27.3■■□□□ 1.96
TVP23C-204ENST00000438826 TOPBP1Q92547 1522 aa27.29■■□□□ 1.96
TVP23C-204ENST00000438826 CLIP1P30622 1438 aa27.22■■□□□ 1.95
TVP23C-204ENST00000438826 POLA1P09884 1462 aaPredicted RBP27.2■■□□□ 1.94
TVP23C-204ENST00000438826 IGF1RP08069 1367 aa27.19■■□□□ 1.94
TVP23C-204ENST00000438826 URB2Q14146 1524 aaKnown RBP27.19■■□□□ 1.94
TVP23C-204ENST00000438826 ABCA10Q8WWZ4 1543 aa27.14■■□□□ 1.94
TVP23C-204ENST00000438826 RAD54L2Q9Y4B4 1467 aa27.13■■□□□ 1.93
TVP23C-204ENST00000438826 PPARGC1BQ86YN6 1023 aaKnown RBP27.13■■□□□ 1.93
TVP23C-204ENST00000438826 KIF21AQ7Z4S6 1674 aa27.12■■□□□ 1.93
TVP23C-204ENST00000438826 HRCP23327 699 aa27.1■■□□□ 1.93
TVP23C-204ENST00000438826 CARMIL1Q5VZK9 1371 aa27.06■■□□□ 1.92
TVP23C-204ENST00000438826 VPS8Q8N3P4 1428 aa27.03■■□□□ 1.92
TVP23C-204ENST00000438826 RANGAP1P46060 587 aaPredicted RBP27.02■■□□□ 1.92
TVP23C-204ENST00000438826 WDR97A6NE52 1622 aa26.96■■□□□ 1.91
TVP23C-204ENST00000438826 MRC2Q9UBG0 1479 aa26.92■■□□□ 1.9
TVP23C-204ENST00000438826 ARAP1Q96P48 1450 aa26.88■■□□□ 1.89
TVP23C-204ENST00000438826 CUL7Q14999 1698 aa26.87■■□□□ 1.89
TVP23C-204ENST00000438826 ABCA5Q8WWZ7 1642 aa26.86■■□□□ 1.89
TVP23C-204ENST00000438826 TDRD9Q8NDG6 1382 aaKnown RBP26.86■■□□□ 1.89
TVP23C-204ENST00000438826 TTBK1Q5TCY1 1321 aaPredicted RBP26.84■■□□□ 1.89
TVP23C-204ENST00000438826 GAPVD1Q14C86 1478 aa26.83■■□□□ 1.89
TVP23C-204ENST00000438826 TARBP1Q13395 1621 aaKnown RBP26.83■■□□□ 1.89
TVP23C-204ENST00000438826 APLP2Q06481 763 aa26.83■■□□□ 1.88
TVP23C-204ENST00000438826 ARHGAP35Q9NRY4 1499 aa26.81■■□□□ 1.88
TVP23C-204ENST00000438826 WDR62O43379 1518 aa26.75■■□□□ 1.87
TVP23C-204ENST00000438826 ERCC6Q03468 1493 aa26.72■■□□□ 1.87
TVP23C-204ENST00000438826 IFT140Q96RY7 1462 aa26.66■■□□□ 1.86
TVP23C-204ENST00000438826 CTTNBP2Q8WZ74 1663 aa26.62■■□□□ 1.85
TVP23C-204ENST00000438826 AQRO60306 1485 aaKnown RBP eCLIP26.61■■□□□ 1.85
TVP23C-204ENST00000438826 PBRM1Q86U86 1689 aa26.59■■□□□ 1.85
TVP23C-204ENST00000438826 ZEB1P37275 1124 aaPredicted RBP26.58■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms