Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP41Q3LFD5 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP41Q3LFD5 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP41Q3LFD5 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP41Q3LFD5 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP41Q3LFD5 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP41Q3LFD5 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP41Q3LFD5 HLA-H-201ENST00000383620 1096 ntBASIC17.66■□□□□ 0.42
USP41Q3LFD5 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 AC027369.6-201ENST00000525520 931 ntBASIC17.66■□□□□ 0.42
USP41Q3LFD5 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.66■□□□□ 0.42
USP41Q3LFD5 AC007967.4-201ENST00000614700 386 ntBASIC17.66■□□□□ 0.42
USP41Q3LFD5 AC073592.8-201ENST00000624126 511 ntBASIC17.66■□□□□ 0.42
USP41Q3LFD5 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP41Q3LFD5 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 AL671710.1-201ENST00000610245 2349 ntBASIC17.66■□□□□ 0.42
USP41Q3LFD5 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP41Q3LFD5 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP41Q3LFD5 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.66■□□□□ 0.42
USP41Q3LFD5 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP41Q3LFD5 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP41Q3LFD5 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.65■□□□□ 0.42
USP41Q3LFD5 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
USP41Q3LFD5 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.65■□□□□ 0.42
USP41Q3LFD5 AL139384.1-201ENST00000612143 3047 ntBASIC17.65■□□□□ 0.42
USP41Q3LFD5 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 MIR661-201ENST00000384842 89 ntBASIC17.65■□□□□ 0.42
USP41Q3LFD5 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.65■□□□□ 0.42
USP41Q3LFD5 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.65■□□□□ 0.42
USP41Q3LFD5 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.65■□□□□ 0.42
USP41Q3LFD5 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
USP41Q3LFD5 LINC02560-201ENST00000596379 459 ntBASIC17.65■□□□□ 0.42
USP41Q3LFD5 AC239800.4-201ENST00000603712 296 ntBASIC17.65■□□□□ 0.42
USP41Q3LFD5 AC008761.3-201ENST00000624803 892 ntBASIC17.65■□□□□ 0.42
USP41Q3LFD5 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.65■□□□□ 0.42
USP41Q3LFD5 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.65■□□□□ 0.42
USP41Q3LFD5 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.65■□□□□ 0.42
USP41Q3LFD5 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.65■□□□□ 0.42
USP41Q3LFD5 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP41Q3LFD5 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
USP41Q3LFD5 KRT8P39-201ENST00000396270 1433 ntBASIC17.64■□□□□ 0.42
USP41Q3LFD5 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
USP41Q3LFD5 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
USP41Q3LFD5 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP41Q3LFD5 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP41Q3LFD5 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP41Q3LFD5 AC073439.1-201ENST00000624121 1774 ntBASIC17.64■□□□□ 0.41
USP41Q3LFD5 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP41Q3LFD5 FOXO1B-201ENST00000504678 1527 ntBASIC17.64■□□□□ 0.41
USP41Q3LFD5 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP41Q3LFD5 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP41Q3LFD5 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP41Q3LFD5 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP41Q3LFD5 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 SPTSSB-204ENST00000617024 1292 ntBASIC17.64■□□□□ 0.41
USP41Q3LFD5 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 AC080080.1-201ENST00000625121 2420 ntBASIC17.64■□□□□ 0.41
USP41Q3LFD5 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP41Q3LFD5 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP41Q3LFD5 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
USP41Q3LFD5 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP41Q3LFD5 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms