RNA–Protein interactions for RNA: ENST00000401884.5

SNED1-204, Transcript of sushi, nidogen and EGF like domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SNED1, Length 4,538 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1-204ENST00000401884 NISCHQ9Y2I1 1504 aa31.77■■■□□ 2.68
SNED1-204ENST00000401884 DCAF8L2P0C7V8 631 aa30.79■■■□□ 2.52
SNED1-204ENST00000401884 SUPT5HO00267 1087 aaKnown RBP29.96■■■□□ 2.39
SNED1-204ENST00000401884 SHROOM4Q9ULL8 1493 aa29.72■■■□□ 2.35
SNED1-204ENST00000401884 EHMT2Q96KQ7 1210 aa28.42■■■□□ 2.14
SNED1-204ENST00000401884 PCGF6Q9BYE7 350 aa28.14■■■□□ 2.1
SNED1-204ENST00000401884 FAM9AQ8IZU1 332 aaPredicted RBP28.07■■■□□ 2.08
SNED1-204ENST00000401884 TRIM41Q8WV44 630 aa27.75■■■□□ 2.03
SNED1-204ENST00000401884 CHIC1Q5VXU3 224 aa27.5■■□□□ 1.99
SNED1-204ENST00000401884 TTBK1Q5TCY1 1321 aaPredicted RBP27.47■■□□□ 1.99
SNED1-204ENST00000401884 APLP2Q06481 763 aa27.47■■□□□ 1.99
SNED1-204ENST00000401884 ZEB1P37275 1124 aaPredicted RBP27.29■■□□□ 1.96
SNED1-204ENST00000401884 LOC105371045A0A1W2PR82 267 aa27.24■■□□□ 1.95
SNED1-204ENST00000401884 HRCP23327 699 aa27.15■■□□□ 1.94
SNED1-204ENST00000401884 CCER1Q8TC90 406 aaPredicted RBP27.14■■□□□ 1.94
SNED1-204ENST00000401884 TRIM26Q12899 539 aaPredicted RBP27.1■■□□□ 1.93
SNED1-204ENST00000401884 UBTFP17480 764 aaKnown RBP27.08■■□□□ 1.92
SNED1-204ENST00000401884 RANGAP1P46060 587 aaPredicted RBP27.07■■□□□ 1.92
SNED1-204ENST00000401884 PPARGC1BQ86YN6 1023 aaKnown RBP27.01■■□□□ 1.91
SNED1-204ENST00000401884 CENPBP07199 599 aaPredicted RBP26.76■■□□□ 1.87
SNED1-204ENST00000401884 PELP1Q8IZL8 1130 aaKnown RBP26.75■■□□□ 1.87
SNED1-204ENST00000401884 ATP1B4Q9UN42 357 aaPredicted RBP26.53■■□□□ 1.84
SNED1-204ENST00000401884 ABCC9O60706 1549 aa26.47■■□□□ 1.83
SNED1-204ENST00000401884 ZCCHC6Q5VYS8 1495 aaKnown RBP26.47■■□□□ 1.83
SNED1-204ENST00000401884 YTHDC1Q96MU7 727 aaKnown RBP26.34■■□□□ 1.81
SNED1-204ENST00000401884 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.27■■□□□ 1.8
SNED1-204ENST00000401884 HNRNPUL2Q1KMD3 747 aaKnown RBP26.25■■□□□ 1.79
SNED1-204ENST00000401884 PABPN1Q86U42 306 aaKnown RBP eCLIP26.17■■□□□ 1.78
SNED1-204ENST00000401884 ITGAEP38570 1179 aa26.1■■□□□ 1.77
SNED1-204ENST00000401884 CCDC180Q9P1Z9 1646 aa26■■□□□ 1.75
SNED1-204ENST00000401884 DIEXFQ68CQ4 756 aaKnown RBP25.93■■□□□ 1.74
SNED1-204ENST00000401884 SCRIBQ14160 1630 aa25.84■■□□□ 1.73
SNED1-204ENST00000401884 NEFLP07196 543 aa25.8■■□□□ 1.72
SNED1-204ENST00000401884 DCAF1Q9Y4B6 1507 aa25.8■■□□□ 1.72
SNED1-204ENST00000401884 CSRNP3Q8WYN3 585 aa25.78■■□□□ 1.72
SNED1-204ENST00000401884 MYO15BQ96JP2 1530 aa25.75■■□□□ 1.71
SNED1-204ENST00000401884 ERICH6Q7L0X2 663 aa25.57■■□□□ 1.68
SNED1-204ENST00000401884 RSF1Q96T23 1441 aaPredicted RBP25.53■■□□□ 1.68
SNED1-204ENST00000401884 FAM50AQ14320 339 aaKnown RBP25.51■■□□□ 1.67
SNED1-204ENST00000401884 ZNF316A6NFI3 1004 aaPredicted RBP25.46■■□□□ 1.67
SNED1-204ENST00000401884 GTF3C3Q9Y5Q9 886 aa25.41■■□□□ 1.66
SNED1-204ENST00000401884 MYT1Q01538 1121 aa25.35■■□□□ 1.65
SNED1-204ENST00000401884 NEUROD1Q13562 356 aa25.33■■□□□ 1.65
SNED1-204ENST00000401884 POLR3GLQ9BT43 218 aa25.33■■□□□ 1.64
SNED1-204ENST00000401884 ACIN1Q9UKV3 1341 aaKnown RBP25.26■■□□□ 1.63
SNED1-204ENST00000401884 CNGB1Q14028 1251 aaPredicted RBP25.22■■□□□ 1.63
SNED1-204ENST00000401884 P3H3Q8IVL6 736 aa25.19■■□□□ 1.62
SNED1-204ENST00000401884 TRIM52Q96A61 297 aa25.14■■□□□ 1.62
SNED1-204ENST00000401884 NACADO15069 1562 aa25.03■■□□□ 1.6
SNED1-204ENST00000401884 CECR2Q9BXF3 1484 aa25.01■■□□□ 1.59
SNED1-204ENST00000401884 RB1CC1Q8TDY2 1594 aa25■■□□□ 1.59
SNED1-204ENST00000401884 ANP32CO43423 234 aa24.97■■□□□ 1.59
SNED1-204ENST00000401884 MYT1LQ9UL68 1186 aa24.97■■□□□ 1.59
SNED1-204ENST00000401884 CEP162Q5TB80 1403 aa24.95■■□□□ 1.58
SNED1-204ENST00000401884 CLIP1P30622 1438 aa24.93■■□□□ 1.58
SNED1-204ENST00000401884 BCANQ96GW7 911 aa24.93■■□□□ 1.58
SNED1-204ENST00000401884 EEA1Q15075 1411 aa24.91■■□□□ 1.58
SNED1-204ENST00000401884 ARID3CA6NKF2 412 aa24.84■■□□□ 1.57
SNED1-204ENST00000401884 WRNQ14191 1432 aaPredicted RBP eCLIP24.83■■□□□ 1.57
SNED1-204ENST00000401884 TNIKQ9UKE5 1360 aa24.81■■□□□ 1.56
SNED1-204ENST00000401884 GOLGA3Q08378 1498 aa24.8■■□□□ 1.56
SNED1-204ENST00000401884 SCAF1Q9H7N4 1312 aaKnown RBP24.79■■□□□ 1.56
SNED1-204ENST00000401884 ZNF326Q5BKZ1 582 aaKnown RBP24.78■■□□□ 1.56
SNED1-204ENST00000401884 FBLN2P98095 1184 aa24.78■■□□□ 1.56
SNED1-204ENST00000401884 BAZ1AQ9NRL2 1556 aaPredicted RBP24.77■■□□□ 1.56
SNED1-204ENST00000401884 MIER1Q8N108 512 aa24.73■■□□□ 1.55
SNED1-204ENST00000401884 MROH2BQ7Z745 1585 aa24.7■■□□□ 1.54
SNED1-204ENST00000401884 DDX10Q13206 875 aaKnown RBP24.68■■□□□ 1.54
SNED1-204ENST00000401884 TONSLQ96HA7 1378 aa24.63■■□□□ 1.53
SNED1-204ENST00000401884 SOGA1O94964 1423 aa24.62■■□□□ 1.53
SNED1-204ENST00000401884 BAZ1BQ9UIG0 1483 aaKnown RBP24.6■■□□□ 1.53
SNED1-204ENST00000401884 CEP164Q9UPV0 1460 aa24.6■■□□□ 1.53
SNED1-204ENST00000401884 DAXXQ9UER7 740 aaPredicted RBP24.58■■□□□ 1.53
SNED1-204ENST00000401884 ZNF777Q9ULD5 760 aaPredicted RBP24.55■■□□□ 1.52
SNED1-204ENST00000401884 CDK11AQ9UQ88 783 aaPredicted RBP24.55■■□□□ 1.52
SNED1-204ENST00000401884 CLSPNQ9HAW4 1339 aa24.5■■□□□ 1.51
SNED1-204ENST00000401884 CHIC2Q9UKJ5 165 aa24.5■■□□□ 1.51
SNED1-204ENST00000401884 SLC4A1APQ9BWU0 796 aaKnown RBP24.49■■□□□ 1.51
SNED1-204ENST00000401884 FKBP8Q14318 412 aa24.47■■□□□ 1.51
SNED1-204ENST00000401884 CCDC88BA6NC98 1476 aa24.47■■□□□ 1.51
SNED1-204ENST00000401884 MTUS2Q5JR59 1369 aa24.46■■□□□ 1.51
SNED1-204ENST00000401884 KIF27Q86VH2 1401 aa24.45■■□□□ 1.51
SNED1-204ENST00000401884 HIRIP3Q9BW71 556 aaPredicted RBP24.43■■□□□ 1.5
SNED1-204ENST00000401884 ABCC8Q09428 1581 aa24.42■■□□□ 1.5
SNED1-204ENST00000401884 HNRNPUQ00839 825 aaKnown RBP eCLIP24.4■■□□□ 1.5
SNED1-204ENST00000401884 WIZO95785 1651 aa24.32■■□□□ 1.48
SNED1-204ENST00000401884 RTL5Q5HYW3 569 aaPredicted RBP24.31■■□□□ 1.48
SNED1-204ENST00000401884 FAM9BQ8IZU0 186 aa24.28■■□□□ 1.48
SNED1-204ENST00000401884 RRP7BPQ9NSQ0 103 aa24.26■■□□□ 1.47
SNED1-204ENST00000401884 VPS8Q8N3P4 1428 aa24.24■■□□□ 1.47
SNED1-204ENST00000401884 SIN3AQ96ST3 1273 aa24.18■■□□□ 1.46
SNED1-204ENST00000401884 CCNB3Q8WWL7 1395 aa24.18■■□□□ 1.46
SNED1-204ENST00000401884 TOP2AP11388 1531 aaKnown RBP24.16■■□□□ 1.46
SNED1-204ENST00000401884 KANK4Q5T7N3 995 aaPredicted RBP24.15■■□□□ 1.46
SNED1-204ENST00000401884 EIF4G2P78344 907 aaKnown RBP eCLIP24.14■■□□□ 1.45
SNED1-204ENST00000401884 MRS2Q9HD23 443 aa24.13■■□□□ 1.45
SNED1-204ENST00000401884 CARMIL1Q5VZK9 1371 aa24.12■■□□□ 1.45
SNED1-204ENST00000401884 TSPY4P0CV99 314 aa24.1■■□□□ 1.45
SNED1-204ENST00000401884 TSPY10P0CW01 314 aa24.1■■□□□ 1.45
SNED1-204ENST00000401884 CUX2O14529 1486 aa24.08■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms