RNA–Protein interactions for RNA: ENST00000262213.6

TRAM1-201, Transcript of translocation associated membrane protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAM1, Length 2,785 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAM1-201ENST00000262213 NISCHQ9Y2I1 1504 aa34.66■■■■□ 3.14
TRAM1-201ENST00000262213 SHROOM4Q9ULL8 1493 aa30.42■■■□□ 2.46
TRAM1-201ENST00000262213 SUPT5HO00267 1087 aaKnown RBP30.04■■■□□ 2.4
TRAM1-201ENST00000262213 CCDC180Q9P1Z9 1646 aa29.73■■■□□ 2.35
TRAM1-201ENST00000262213 ZCCHC6Q5VYS8 1495 aaKnown RBP29.35■■■□□ 2.29
TRAM1-201ENST00000262213 DCAF8L2P0C7V8 631 aa29.24■■■□□ 2.27
TRAM1-201ENST00000262213 MYO15BQ96JP2 1530 aa29.22■■■□□ 2.27
TRAM1-201ENST00000262213 CHIC1Q5VXU3 224 aa29.18■■■□□ 2.26
TRAM1-201ENST00000262213 HRCP23327 699 aa29.06■■■□□ 2.24
TRAM1-201ENST00000262213 PCGF6Q9BYE7 350 aa28.95■■■□□ 2.23
TRAM1-201ENST00000262213 PPARGC1BQ86YN6 1023 aaKnown RBP28.67■■■□□ 2.18
TRAM1-201ENST00000262213 LOC105371045A0A1W2PR82 267 aa28.56■■■□□ 2.16
TRAM1-201ENST00000262213 DCAF1Q9Y4B6 1507 aa28.29■■■□□ 2.12
TRAM1-201ENST00000262213 TRIM26Q12899 539 aaPredicted RBP28.07■■■□□ 2.08
TRAM1-201ENST00000262213 ABCC9O60706 1549 aa27.96■■■□□ 2.07
TRAM1-201ENST00000262213 FAM9AQ8IZU1 332 aaPredicted RBP27.84■■■□□ 2.05
TRAM1-201ENST00000262213 EHMT2Q96KQ7 1210 aa27.8■■■□□ 2.04
TRAM1-201ENST00000262213 TRIM41Q8WV44 630 aa27.78■■■□□ 2.04
TRAM1-201ENST00000262213 SCRIBQ14160 1630 aa27.7■■■□□ 2.02
TRAM1-201ENST00000262213 RSF1Q96T23 1441 aaPredicted RBP27.69■■■□□ 2.02
TRAM1-201ENST00000262213 NACADO15069 1562 aa27.63■■■□□ 2.01
TRAM1-201ENST00000262213 ZEB1P37275 1124 aaPredicted RBP27.55■■■□□ 2
TRAM1-201ENST00000262213 RB1CC1Q8TDY2 1594 aa27.54■■■□□ 2
TRAM1-201ENST00000262213 CECR2Q9BXF3 1484 aa27.2■■□□□ 1.95
TRAM1-201ENST00000262213 SCAF1Q9H7N4 1312 aaKnown RBP27.18■■□□□ 1.94
TRAM1-201ENST00000262213 MROH2BQ7Z745 1585 aa27.09■■□□□ 1.93
TRAM1-201ENST00000262213 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.09■■□□□ 1.93
TRAM1-201ENST00000262213 WIZO95785 1651 aa27■■□□□ 1.91
TRAM1-201ENST00000262213 CCER1Q8TC90 406 aaPredicted RBP26.99■■□□□ 1.91
TRAM1-201ENST00000262213 TTBK1Q5TCY1 1321 aaPredicted RBP26.99■■□□□ 1.91
TRAM1-201ENST00000262213 PELP1Q8IZL8 1130 aaKnown RBP26.9■■□□□ 1.9
TRAM1-201ENST00000262213 UNC13AQ9UPW8 1703 aa26.87■■□□□ 1.89
TRAM1-201ENST00000262213 NEUROD1Q13562 356 aa26.7■■□□□ 1.87
TRAM1-201ENST00000262213 ACIN1Q9UKV3 1341 aaKnown RBP26.69■■□□□ 1.86
TRAM1-201ENST00000262213 BAZ1AQ9NRL2 1556 aaPredicted RBP26.68■■□□□ 1.86
TRAM1-201ENST00000262213 DIEXFQ68CQ4 756 aaKnown RBP26.65■■□□□ 1.86
TRAM1-201ENST00000262213 ABCC8Q09428 1581 aa26.65■■□□□ 1.86
TRAM1-201ENST00000262213 EIF4G1Q04637 1599 aaKnown RBP26.6■■□□□ 1.85
TRAM1-201ENST00000262213 CCDC88BA6NC98 1476 aa26.59■■□□□ 1.85
TRAM1-201ENST00000262213 BICRAQ9NZM4 1560 aa26.59■■□□□ 1.85
TRAM1-201ENST00000262213 CEP162Q5TB80 1403 aa26.52■■□□□ 1.84
TRAM1-201ENST00000262213 GTF3C3Q9Y5Q9 886 aa26.51■■□□□ 1.83
TRAM1-201ENST00000262213 SOGA1O94964 1423 aa26.49■■□□□ 1.83
TRAM1-201ENST00000262213 UBTFP17480 764 aaKnown RBP26.48■■□□□ 1.83
TRAM1-201ENST00000262213 CENPBP07199 599 aaPredicted RBP26.46■■□□□ 1.83
TRAM1-201ENST00000262213 WRNQ14191 1432 aaPredicted RBP eCLIP26.42■■□□□ 1.82
TRAM1-201ENST00000262213 TOP2AP11388 1531 aaKnown RBP26.41■■□□□ 1.82
TRAM1-201ENST00000262213 PABPN1Q86U42 306 aaKnown RBP eCLIP26.38■■□□□ 1.81
TRAM1-201ENST00000262213 RUSC2Q8N2Y8 1516 aa26.36■■□□□ 1.81
TRAM1-201ENST00000262213 CSRNP3Q8WYN3 585 aa26.35■■□□□ 1.81
TRAM1-201ENST00000262213 TNIKQ9UKE5 1360 aa26.34■■□□□ 1.81
TRAM1-201ENST00000262213 SMARCA2P51531 1590 aa26.34■■□□□ 1.81
TRAM1-201ENST00000262213 SMARCA4P51532 1647 aa26.31■■□□□ 1.8
TRAM1-201ENST00000262213 YTHDC1Q96MU7 727 aaKnown RBP26.3■■□□□ 1.8
TRAM1-201ENST00000262213 ZNF316A6NFI3 1004 aaPredicted RBP26.27■■□□□ 1.8
TRAM1-201ENST00000262213 HNRNPUL2Q1KMD3 747 aaKnown RBP26.24■■□□□ 1.79
TRAM1-201ENST00000262213 EEA1Q15075 1411 aa26.13■■□□□ 1.77
TRAM1-201ENST00000262213 GOLGA3Q08378 1498 aa26.13■■□□□ 1.77
TRAM1-201ENST00000262213 RANGAP1P46060 587 aaPredicted RBP26.12■■□□□ 1.77
TRAM1-201ENST00000262213 MIER1Q8N108 512 aa26.06■■□□□ 1.76
TRAM1-201ENST00000262213 APLP2Q06481 763 aa25.94■■□□□ 1.74
TRAM1-201ENST00000262213 CLIP1P30622 1438 aa25.94■■□□□ 1.74
TRAM1-201ENST00000262213 PEG3Q9GZU2 1588 aa25.93■■□□□ 1.74
TRAM1-201ENST00000262213 CEP164Q9UPV0 1460 aa25.9■■□□□ 1.74
TRAM1-201ENST00000262213 SYNJ1O43426 1573 aa25.88■■□□□ 1.73
TRAM1-201ENST00000262213 VPS8Q8N3P4 1428 aa25.8■■□□□ 1.72
TRAM1-201ENST00000262213 KIF21BO75037 1637 aa25.78■■□□□ 1.72
TRAM1-201ENST00000262213 RAPGEF2Q9Y4G8 1499 aa25.78■■□□□ 1.72
TRAM1-201ENST00000262213 ATAD2BQ9ULI0 1458 aa25.76■■□□□ 1.71
TRAM1-201ENST00000262213 BAZ1BQ9UIG0 1483 aaKnown RBP25.61■■□□□ 1.69
TRAM1-201ENST00000262213 MYT1Q01538 1121 aa25.57■■□□□ 1.68
TRAM1-201ENST00000262213 KANK4Q5T7N3 995 aaPredicted RBP25.53■■□□□ 1.68
TRAM1-201ENST00000262213 DHX57Q6P158 1386 aaKnown RBP25.52■■□□□ 1.68
TRAM1-201ENST00000262213 HMGXB3Q12766 1538 aa25.5■■□□□ 1.67
TRAM1-201ENST00000262213 NCAPD3P42695 1498 aa25.5■■□□□ 1.67
TRAM1-201ENST00000262213 ITGAEP38570 1179 aa25.46■■□□□ 1.67
TRAM1-201ENST00000262213 ARAP1Q96P48 1450 aa25.4■■□□□ 1.66
TRAM1-201ENST00000262213 TOP2BQ02880 1626 aa25.4■■□□□ 1.66
TRAM1-201ENST00000262213 CLSPNQ9HAW4 1339 aa25.37■■□□□ 1.65
TRAM1-201ENST00000262213 SUPT16HQ9Y5B9 1047 aaKnown RBP25.34■■□□□ 1.65
TRAM1-201ENST00000262213 CC2D2AQ9P2K1 1620 aa25.33■■□□□ 1.64
TRAM1-201ENST00000262213 PRXQ9BXM0 1461 aa25.3■■□□□ 1.64
TRAM1-201ENST00000262213 ERICH3Q5RHP9 1530 aa25.26■■□□□ 1.63
TRAM1-201ENST00000262213 BIVM-ERCC5R4GMW8 1640 aa25.24■■□□□ 1.63
TRAM1-201ENST00000262213 KCNH8Q96L42 1107 aa25.22■■□□□ 1.63
TRAM1-201ENST00000262213 CCNB3Q8WWL7 1395 aa25.2■■□□□ 1.63
TRAM1-201ENST00000262213 RRBP1Q9P2E9 1410 aaKnown RBP25.2■■□□□ 1.63
TRAM1-201ENST00000262213 KIF27Q86VH2 1401 aa25.16■■□□□ 1.62
TRAM1-201ENST00000262213 CUX1P39880 1505 aa25.15■■□□□ 1.62
TRAM1-201ENST00000262213 ARHGAP35Q9NRY4 1499 aa25.11■■□□□ 1.61
TRAM1-201ENST00000262213 RAB3GAP2Q9H2M9 1393 aa25.09■■□□□ 1.61
TRAM1-201ENST00000262213 BCANQ96GW7 911 aa25.08■■□□□ 1.61
TRAM1-201ENST00000262213 TSHZ2Q9NRE2 1034 aa25.05■■□□□ 1.6
TRAM1-201ENST00000262213 CUX2O14529 1486 aa25.03■■□□□ 1.6
TRAM1-201ENST00000262213 DDX10Q13206 875 aaKnown RBP25.03■■□□□ 1.6
TRAM1-201ENST00000262213 FAM50AQ14320 339 aaKnown RBP25.02■■□□□ 1.6
TRAM1-201ENST00000262213 SIN3AQ96ST3 1273 aa25.02■■□□□ 1.6
TRAM1-201ENST00000262213 ATP1B4Q9UN42 357 aaPredicted RBP25.01■■□□□ 1.59
TRAM1-201ENST00000262213 CFTRP13569 1480 aa24.99■■□□□ 1.59
TRAM1-201ENST00000262213 HIRIP3Q9BW71 556 aaPredicted RBP24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 1254 ms