Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
RNF40O75150 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 PMPCAP1-201ENST00000508114 1576 ntBASIC18.06■□□□□ 0.48
RNF40O75150 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.06■□□□□ 0.48
RNF40O75150 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
RNF40O75150 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.06■□□□□ 0.48
RNF40O75150 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.06■□□□□ 0.48
RNF40O75150 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.06■□□□□ 0.48
RNF40O75150 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.06■□□□□ 0.48
RNF40O75150 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.06■□□□□ 0.48
RNF40O75150 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
RNF40O75150 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.06■□□□□ 0.48
RNF40O75150 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
RNF40O75150 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.06■□□□□ 0.48
RNF40O75150 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.06■□□□□ 0.48
RNF40O75150 MIR1199-201ENST00000621445 119 ntBASIC18.06■□□□□ 0.48
RNF40O75150 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.06■□□□□ 0.48
RNF40O75150 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC18.06■□□□□ 0.48
RNF40O75150 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.06■□□□□ 0.48
RNF40O75150 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.06■□□□□ 0.48
RNF40O75150 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.06■□□□□ 0.48
RNF40O75150 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
RNF40O75150 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.06■□□□□ 0.48
RNF40O75150 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
RNF40O75150 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF40O75150 AC004817.3-201ENST00000602957 2129 ntBASIC18.05■□□□□ 0.48
RNF40O75150 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
RNF40O75150 AC009949.1-201ENST00000623048 1830 ntBASIC18.05■□□□□ 0.48
RNF40O75150 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.05■□□□□ 0.48
RNF40O75150 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
RNF40O75150 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF40O75150 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF40O75150 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
RNF40O75150 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF40O75150 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.05■□□□□ 0.48
RNF40O75150 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF40O75150 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF40O75150 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 AP001160.2-201ENST00000596071 487 ntBASIC18.05■□□□□ 0.48
RNF40O75150 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.05■□□□□ 0.48
RNF40O75150 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF40O75150 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
RNF40O75150 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF40O75150 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF40O75150 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF40O75150 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF40O75150 AC010460.3-201ENST00000511359 1579 ntBASIC18.04■□□□□ 0.48
RNF40O75150 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.04■□□□□ 0.48
RNF40O75150 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.04■□□□□ 0.48
RNF40O75150 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF40O75150 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
RNF40O75150 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
RNF40O75150 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
RNF40O75150 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.04■□□□□ 0.48
RNF40O75150 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
RNF40O75150 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF40O75150 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF40O75150 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
RNF40O75150 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF40O75150 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF40O75150 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RNF40O75150 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms