Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC22.36■■□□□ 1.17
SOX3P41225 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SOX3P41225 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC22.36■■□□□ 1.17
SOX3P41225 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SOX3P41225 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SOX3P41225 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SOX3P41225 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SOX3P41225 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC22.35■■□□□ 1.17
SOX3P41225 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SOX3P41225 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
SOX3P41225 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SOX3P41225 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SOX3P41225 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
SOX3P41225 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.34■■□□□ 1.17
SOX3P41225 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.34■■□□□ 1.17
SOX3P41225 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SOX3P41225 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
SOX3P41225 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SOX3P41225 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC22.34■■□□□ 1.17
SOX3P41225 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC22.34■■□□□ 1.17
SOX3P41225 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC22.34■■□□□ 1.17
SOX3P41225 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.33■■□□□ 1.17
SOX3P41225 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SOX3P41225 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SOX3P41225 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SOX3P41225 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
SOX3P41225 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
SOX3P41225 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
SOX3P41225 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC22.33■■□□□ 1.17
SOX3P41225 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SOX3P41225 AC018755.3-202ENST00000596210 929 ntBASIC22.33■■□□□ 1.17
SOX3P41225 MIR6765-201ENST00000614092 87 ntBASIC22.33■■□□□ 1.17
SOX3P41225 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SOX3P41225 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
SOX3P41225 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SOX3P41225 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
SOX3P41225 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
SOX3P41225 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SOX3P41225 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC22.32■■□□□ 1.16
SOX3P41225 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SOX3P41225 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SOX3P41225 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SOX3P41225 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC22.31■■□□□ 1.16
SOX3P41225 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC22.31■■□□□ 1.16
SOX3P41225 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC22.31■■□□□ 1.16
SOX3P41225 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SOX3P41225 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
SOX3P41225 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SOX3P41225 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SOX3P41225 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
SOX3P41225 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SOX3P41225 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SOX3P41225 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC22.3■■□□□ 1.16
SOX3P41225 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
SOX3P41225 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.3■■□□□ 1.16
SOX3P41225 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
SOX3P41225 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.3■■□□□ 1.16
SOX3P41225 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SOX3P41225 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SOX3P41225 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
SOX3P41225 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC22.29■■□□□ 1.16
SOX3P41225 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC22.29■■□□□ 1.16
SOX3P41225 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SOX3P41225 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SOX3P41225 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
SOX3P41225 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SOX3P41225 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SOX3P41225 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC22.28■■□□□ 1.16
SOX3P41225 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
SOX3P41225 DUSP8P4-201ENST00000399538 1761 ntBASIC22.28■■□□□ 1.16
SOX3P41225 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC22.28■■□□□ 1.16
SOX3P41225 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC22.28■■□□□ 1.16
SOX3P41225 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC22.28■■□□□ 1.16
SOX3P41225 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.28■■□□□ 1.16
SOX3P41225 AC092803.2-201ENST00000564287 1899 ntBASIC22.28■■□□□ 1.16
SOX3P41225 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SOX3P41225 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
SOX3P41225 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SOX3P41225 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SOX3P41225 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SOX3P41225 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SOX3P41225 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
SOX3P41225 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
SOX3P41225 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
SOX3P41225 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SOX3P41225 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SOX3P41225 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
SOX3P41225 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
SOX3P41225 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SOX3P41225 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SOX3P41225 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.25■■□□□ 1.15
SOX3P41225 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
SOX3P41225 BHLHE23-202ENST00000612929 1109 ntBASIC22.24■■□□□ 1.15
SOX3P41225 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC22.23■■□□□ 1.15
SOX3P41225 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.23■■□□□ 1.15
SOX3P41225 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SOX3P41225 AC139795.1-202ENST00000500444 432 ntBASIC22.23■■□□□ 1.15
SOX3P41225 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
SOX3P41225 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22.23■■□□□ 1.15
SOX3P41225 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms