Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SEPT9-207ENST00000449803 3996 ntTSL 2 BASIC13.01□□□□□ -0.333e-7■■■■□ 23.5
YBX3P16989 SEPT9-201ENST00000329047 4453 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.423e-7■■■■□ 23.5
YBX3P16989 SEPT9-205ENST00000427674 3937 ntTSL 1 (best) BASIC12.19□□□□□ -0.463e-7■■■■□ 23.5
YBX3P16989 GUSB-207ENST00000462371 820 ntTSL 319.24■□□□□ 0.677e-7■■■■□ 23.5
YBX3P16989 UQCR10-202ENST00000401406 584 ntTSL 1 (best) BASIC12.65□□□□□ -0.386e-11■■■■□ 23.4
YBX3P16989 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.186e-11■■■■□ 23.4
YBX3P16989 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.252e-8■■■■□ 23.4
YBX3P16989 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.44e-7■■■■□ 23.4
YBX3P16989 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.294e-7■■■■□ 23.4
YBX3P16989 TSKU-203ENST00000527881 3554 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.44e-7■■■■□ 23.4
YBX3P16989 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC24.78■■□□□ 1.561e-7■■■■□ 23.4
YBX3P16989 BPTF-208ENST00000544778 7573 ntTSL 520.33■□□□□ 0.852e-10■■■■□ 23.4
YBX3P16989 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC16.4■□□□□ 0.221e-7■■■■□ 23.4
YBX3P16989 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC16.09■□□□□ 0.171e-7■■■■□ 23.4
YBX3P16989 AC064799.1-201ENST00000498103 555 ntBASIC13.27□□□□□ -0.292e-7■■■■□ 23.4
YBX3P16989 DCAF13-208ENST00000612750 1967 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.341e-7■■■■□ 23.4
YBX3P16989 VTA1-203ENST00000452973 3177 ntTSL 2 BASIC12.77□□□□□ -0.371e-7■■■■□ 23.4
YBX3P16989 VTA1-201ENST00000367621 1284 ntTSL 5 BASIC11.19□□□□□ -0.621e-7■■■■□ 23.4
YBX3P16989 VTA1-205ENST00000620996 3272 ntTSL 3 BASIC11.01□□□□□ -0.651e-7■■■■□ 23.4
YBX3P16989 CREBBP-203ENST00000570939 3316 ntTSL 510.1□□□□□ -0.791e-7■■■■□ 23.4
YBX3P16989 CAST-205ENST00000348386 2272 ntTSL 1 (best)9.34□□□□□ -0.911e-7■■■■□ 23.4
YBX3P16989 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.231e-7■■■■□ 23.4
YBX3P16989 DCAF13-202ENST00000518554 5300 ntTSL 27.18□□□□□ -1.261e-7■■■■□ 23.4
YBX3P16989 DCAF13-207ENST00000611541 3496 nt4.66□□□□□ -1.661e-7■■■■□ 23.4
YBX3P16989 TTF1-203ENST00000612514 1780 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.684e-6■■■■□ 23.4
YBX3P16989 TTF1-201ENST00000334270 3052 ntAPPRIS P3 TSL 1 (best) BASIC9.15□□□□□ -0.944e-6■■■■□ 23.4
YBX3P16989 TTF1-202ENST00000461970 581 ntTSL 29.11□□□□□ -0.954e-6■■■■□ 23.4
YBX3P16989 TEX2-208ENST00000584379 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.474e-7■■■■□ 23.4
YBX3P16989 TEX2-204ENST00000583097 4852 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.494e-7■■■■□ 23.4
YBX3P16989 TEX2-210ENST00000615733 4852 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.494e-7■■■■□ 23.4
YBX3P16989 TEX2-201ENST00000258991 5232 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.734e-7■■■■□ 23.4
YBX3P16989 TEX2-209ENST00000584498 5124 ntTSL 1 (best)10.25□□□□□ -0.774e-7■■■■□ 23.4
YBX3P16989 ST6GALNAC4-202ENST00000361444 1013 ntTSL 523.41■■□□□ 1.342e-7■■■■□ 23.4
YBX3P16989 ST6GALNAC4-203ENST00000467674 812 ntTSL 222.21■■□□□ 1.152e-7■■■■□ 23.4
YBX3P16989 ST6GALNAC4-207ENST00000495983 1362 ntTSL 520.05■□□□□ 0.82e-7■■■■□ 23.4
YBX3P16989 ST6GALNAC4-204ENST00000474282 384 ntTSL 311.46□□□□□ -0.572e-7■■■■□ 23.4
YBX3P16989 TMEM39B-207ENST00000476968 1994 ntTSL 522.95■■□□□ 1.261e-7■■■■□ 23.4
YBX3P16989 TMEM39B-203ENST00000441402 1538 ntTSL 1 (best)19.51■□□□□ 0.711e-7■■■■□ 23.4
YBX3P16989 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.451e-7■■■■□ 23.4
YBX3P16989 TMEM39B-205ENST00000468135 1834 ntTSL 517.72■□□□□ 0.431e-7■■■■□ 23.4
YBX3P16989 TMEM39B-208ENST00000487305 2087 ntTSL 212.55□□□□□ -0.41e-7■■■■□ 23.4
YBX3P16989 UBA2-210ENST00000607361 754 ntTSL 235.58■■■■□ 3.294e-8■■■■□ 23.4
YBX3P16989 UBA2-205ENST00000590048 847 ntTSL 319.39■□□□□ 0.694e-8■■■■□ 23.4
YBX3P16989 SYNGAP1-206ENST00000479510 2073 ntTSL 225.05■■□□□ 1.61e-7■■■■□ 23.4
YBX3P16989 URM1-206ENST00000483206 731 ntTSL 220.57■□□□□ 0.881e-7■■■■□ 23.4
YBX3P16989 LINC00339-207ENST00000634712 1388 ntTSL 520.46■□□□□ 0.871e-7■■■■□ 23.4
YBX3P16989 SYNGAP1-227ENST00000638142 2499 ntTSL 520.38■□□□□ 0.851e-7■■■■□ 23.4
YBX3P16989 LINC00339-203ENST00000420503 771 ntTSL 318.14■□□□□ 0.491e-7■■■■□ 23.4
YBX3P16989 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC18.14■□□□□ 0.491e-7■■■■□ 23.4
YBX3P16989 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17.93■□□□□ 0.461e-7■■■■□ 23.4
YBX3P16989 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.88■□□□□ 0.451e-7■■■■□ 23.4
YBX3P16989 URM1-205ENST00000470840 723 ntTSL 216.27■□□□□ 0.21e-7■■■■□ 23.4
YBX3P16989 LINC00339-204ENST00000434233 929 ntTSL 1 (best)15.09■□□□□ 0.011e-7■■■■□ 23.4
YBX3P16989 LINC00339-201ENST00000404210 1189 ntBASIC15.09■□□□□ 0.011e-7■■■■□ 23.4
YBX3P16989 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.8□□□□□ -0.041e-7■■■■□ 23.4
YBX3P16989 SYNGAP1-207ENST00000628646 4264 ntTSL 5 BASIC14.55□□□□□ -0.081e-7■■■■□ 23.4
YBX3P16989 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.181e-7■■■■□ 23.4
YBX3P16989 SYNGAP1-204ENST00000449372 3930 ntTSL 513.85□□□□□ -0.191e-7■■■■□ 23.4
YBX3P16989 SYNGAP1-201ENST00000293748 4556 ntTSL 513.5□□□□□ -0.251e-7■■■■□ 23.4
YBX3P16989 ZNF792-202ENST00000605484 2567 ntTSL 1 (best) BASIC12.55□□□□□ -0.41e-7■■■■□ 23.4
YBX3P16989 LINC00339-210ENST00000635675 1404 ntTSL 5 BASIC12.46□□□□□ -0.411e-7■■■■□ 23.4
YBX3P16989 URM1-203ENST00000372853 2650 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.551e-7■■■■□ 23.4
YBX3P16989 SDAD1-205ENST00000503411 802 ntTSL 310.33□□□□□ -0.761e-7■■■■□ 23.4
YBX3P16989 URM1-204ENST00000452446 2944 ntTSL 2 BASIC10.32□□□□□ -0.761e-7■■■■□ 23.4
YBX3P16989 URM1-202ENST00000372850 3045 ntTSL 1 (best) BASIC9.5□□□□□ -0.891e-7■■■■□ 23.4
YBX3P16989 SDAD1-207ENST00000507396 549 ntTSL 58.17□□□□□ -1.11e-7■■■■□ 23.4
YBX3P16989 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC7.66□□□□□ -1.181e-7■■■■□ 23.4
YBX3P16989 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.381e-7■■■■□ 23.4
YBX3P16989 SDAD1-202ENST00000395710 3080 ntTSL 1 (best)5.5□□□□□ -1.531e-7■■■■□ 23.4
YBX3P16989 SDAD1-210ENST00000515836 362 ntTSL 24.7□□□□□ -1.661e-7■■■■□ 23.4
YBX3P16989 UQCRH-201ENST00000311672 604 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.014e-42■■■■□ 23.4
YBX3P16989 UQCRH-202ENST00000460947 621 ntTSL 210.94□□□□□ -0.664e-42■■■■□ 23.4
YBX3P16989 UQCRH-205ENST00000496387 674 ntTSL 1 (best)7.29□□□□□ -1.244e-42■■■■□ 23.4
YBX3P16989 UQCRH-204ENST00000489056 553 ntTSL 25.69□□□□□ -1.54e-42■■■■□ 23.4
YBX3P16989 POLE3-204ENST00000479871 2396 ntTSL 214.62□□□□□ -0.071e-7■■■■□ 23.4
YBX3P16989 POLE3-202ENST00000374171 2191 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.211e-7■■■■□ 23.4
YBX3P16989 POLE3-201ENST00000374169 2109 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.221e-7■■■■□ 23.4
YBX3P16989 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC4.82□□□□□ -1.648e-8■■■■□ 23.3
YBX3P16989 SESTD1-203ENST00000428443 10615 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.914e-8■■■■□ 23.3
YBX3P16989 API5-201ENST00000378852 3714 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.662e-6■■■■□ 23.2
YBX3P16989 DARS2-201ENST00000361951 3506 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.032e-6■■■■□ 23.2
YBX3P16989 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC25.78■■□□□ 1.727e-9■■■■□ 23.2
YBX3P16989 ANXA2-226ENST00000559818 878 ntTSL 520.49■□□□□ 0.877e-9■■■■□ 23.2
YBX3P16989 ANXA2-214ENST00000558985 780 ntTSL 213.65□□□□□ -0.227e-9■■■■□ 23.2
YBX3P16989 ANXA2-203ENST00000421017 1444 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.497e-9■■■■□ 23.2
YBX3P16989 ANXA2-204ENST00000451270 1435 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.517e-9■■■■□ 23.2
YBX3P16989 ANXA2-202ENST00000396024 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.577e-9■■■■□ 23.2
YBX3P16989 ANXA2-232ENST00000560466 665 ntTSL 511.46□□□□□ -0.577e-9■■■■□ 23.2
YBX3P16989 ANXA2-210ENST00000558132 580 ntTSL 39.06□□□□□ -0.967e-9■■■■□ 23.2
YBX3P16989 ANXA2-237ENST00000561022 834 ntTSL 58.72□□□□□ -1.017e-9■■■■□ 23.2
YBX3P16989 ANXA2-212ENST00000558503 828 ntTSL 57.81□□□□□ -1.167e-9■■■■□ 23.2
YBX3P16989 ANXA2-230ENST00000560367 777 ntTSL 36.6□□□□□ -1.357e-9■■■■□ 23.2
YBX3P16989 ANXA2-216ENST00000558998 543 ntTSL 54.34□□□□□ -1.717e-9■■■■□ 23.2
YBX3P16989 RAB5C-209ENST00000552162 551 ntTSL 422.94■■□□□ 1.264e-8■■■■□ 23.1
YBX3P16989 RAB5C-203ENST00000546881 608 ntTSL 215.84■□□□□ 0.134e-8■■■■□ 23.1
YBX3P16989 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.064e-7■■■■□ 23.1
YBX3P16989 RBBP8-204ENST00000399722 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.614e-7■■■■□ 23.1
YBX3P16989 RBBP8-203ENST00000399721 2229 ntTSL 1 (best)9.64□□□□□ -0.874e-7■■■■□ 23.1
YBX3P16989 RBBP8-205ENST00000399725 3260 ntTSL 1 (best) BASIC9.6□□□□□ -0.874e-7■■■■□ 23.1
YBX3P16989 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.39□□□□□ -1.874e-7■■■■□ 23.1
Retrieved 100 of 29,075 protein–RNA pairs in 602.1 ms