RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 NISCHQ9Y2I1 1504 aa41.24■■■■■ 4.19
SYNGAP1-227ENST00000638142 SHROOM4Q9ULL8 1493 aa35.08■■■■□ 3.21
SYNGAP1-227ENST00000638142 CCDC180Q9P1Z9 1646 aa35.06■■■■□ 3.2
SYNGAP1-227ENST00000638142 ZCCHC6Q5VYS8 1495 aaKnown RBP34.97■■■■□ 3.19
SYNGAP1-227ENST00000638142 SUPT5HO00267 1087 aaKnown RBP34.53■■■■□ 3.12
SYNGAP1-227ENST00000638142 DCAF1Q9Y4B6 1507 aa33.97■■■■□ 3.03
SYNGAP1-227ENST00000638142 DCAF8L2P0C7V8 631 aa33.85■■■■□ 3.01
SYNGAP1-227ENST00000638142 CHIC1Q5VXU3 224 aa33.8■■■■□ 3
SYNGAP1-227ENST00000638142 MYO15BQ96JP2 1530 aa33.7■■■□□ 2.99
SYNGAP1-227ENST00000638142 HRCP23327 699 aa33.19■■■□□ 2.9
SYNGAP1-227ENST00000638142 ABCC9O60706 1549 aa33.05■■■□□ 2.88
SYNGAP1-227ENST00000638142 PCGF6Q9BYE7 350 aa32.9■■■□□ 2.86
SYNGAP1-227ENST00000638142 SCRIBQ14160 1630 aa32.72■■■□□ 2.83
SYNGAP1-227ENST00000638142 LOC105371045A0A1W2PR82 267 aa32.69■■■□□ 2.82
SYNGAP1-227ENST00000638142 RSF1Q96T23 1441 aaPredicted RBP32.68■■■□□ 2.82
SYNGAP1-227ENST00000638142 RB1CC1Q8TDY2 1594 aa32.44■■■□□ 2.78
SYNGAP1-227ENST00000638142 TRIM26Q12899 539 aaPredicted RBP32.36■■■□□ 2.77
SYNGAP1-227ENST00000638142 NACADO15069 1562 aa32.33■■■□□ 2.77
SYNGAP1-227ENST00000638142 PPARGC1BQ86YN6 1023 aaKnown RBP32.27■■■□□ 2.76
SYNGAP1-227ENST00000638142 TRIM41Q8WV44 630 aa32.24■■■□□ 2.75
SYNGAP1-227ENST00000638142 CECR2Q9BXF3 1484 aa32.05■■■□□ 2.72
SYNGAP1-227ENST00000638142 MROH2BQ7Z745 1585 aa32.01■■■□□ 2.71
SYNGAP1-227ENST00000638142 ZEB1P37275 1124 aaPredicted RBP31.85■■■□□ 2.69
SYNGAP1-227ENST00000638142 FAM9AQ8IZU1 332 aaPredicted RBP31.85■■■□□ 2.69
SYNGAP1-227ENST00000638142 WIZO95785 1651 aa31.84■■■□□ 2.69
SYNGAP1-227ENST00000638142 BAZ1AQ9NRL2 1556 aaPredicted RBP31.78■■■□□ 2.68
SYNGAP1-227ENST00000638142 EIF4G1Q04637 1599 aaKnown RBP31.63■■■□□ 2.65
SYNGAP1-227ENST00000638142 EHMT2Q96KQ7 1210 aa31.46■■■□□ 2.63
SYNGAP1-227ENST00000638142 TOP2AP11388 1531 aaKnown RBP31.45■■■□□ 2.63
SYNGAP1-227ENST00000638142 SMARCA4P51532 1647 aa31.37■■■□□ 2.61
SYNGAP1-227ENST00000638142 SMARCA2P51531 1590 aa31.25■■■□□ 2.59
SYNGAP1-227ENST00000638142 CCDC88BA6NC98 1476 aa31.25■■■□□ 2.59
SYNGAP1-227ENST00000638142 UNC13AQ9UPW8 1703 aa31.2■■■□□ 2.59
SYNGAP1-227ENST00000638142 ABCC8Q09428 1581 aa31.18■■■□□ 2.58
SYNGAP1-227ENST00000638142 WRNQ14191 1432 aaPredicted RBP eCLIP31.1■■■□□ 2.571e-7■■■■■ 66.8
SYNGAP1-227ENST00000638142 EEA1Q15075 1411 aa31.02■■■□□ 2.56
SYNGAP1-227ENST00000638142 CEP162Q5TB80 1403 aa30.97■■■□□ 2.55
SYNGAP1-227ENST00000638142 TNIKQ9UKE5 1360 aa30.95■■■□□ 2.55
SYNGAP1-227ENST00000638142 PELP1Q8IZL8 1130 aaKnown RBP30.94■■■□□ 2.54
SYNGAP1-227ENST00000638142 SOGA1O94964 1423 aa30.93■■■□□ 2.54
SYNGAP1-227ENST00000638142 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.89■■■□□ 2.54
SYNGAP1-227ENST00000638142 CCER1Q8TC90 406 aaPredicted RBP30.89■■■□□ 2.54
SYNGAP1-227ENST00000638142 PEG3Q9GZU2 1588 aa30.83■■■□□ 2.53
SYNGAP1-227ENST00000638142 CSRNP3Q8WYN3 585 aa30.83■■■□□ 2.53
SYNGAP1-227ENST00000638142 BICRAQ9NZM4 1560 aa30.81■■■□□ 2.52
SYNGAP1-227ENST00000638142 SCAF1Q9H7N4 1312 aaKnown RBP30.78■■■□□ 2.52
SYNGAP1-227ENST00000638142 GOLGA3Q08378 1498 aa30.74■■■□□ 2.51
SYNGAP1-227ENST00000638142 RUSC2Q8N2Y8 1516 aa30.74■■■□□ 2.51
SYNGAP1-227ENST00000638142 UBTFP17480 764 aaKnown RBP30.66■■■□□ 2.5
SYNGAP1-227ENST00000638142 PABPN1Q86U42 306 aaKnown RBP eCLIP30.62■■■□□ 2.49
SYNGAP1-227ENST00000638142 CEP164Q9UPV0 1460 aa30.56■■■□□ 2.48
SYNGAP1-227ENST00000638142 TTBK1Q5TCY1 1321 aaPredicted RBP30.55■■■□□ 2.48
SYNGAP1-227ENST00000638142 KIF21BO75037 1637 aa30.55■■■□□ 2.48
SYNGAP1-227ENST00000638142 SYNJ1O43426 1573 aa30.53■■■□□ 2.48
SYNGAP1-227ENST00000638142 ATAD2BQ9ULI0 1458 aa30.48■■■□□ 2.47
SYNGAP1-227ENST00000638142 DIEXFQ68CQ4 756 aaKnown RBP30.43■■■□□ 2.46
SYNGAP1-227ENST00000638142 BAZ1BQ9UIG0 1483 aaKnown RBP30.41■■■□□ 2.46
SYNGAP1-227ENST00000638142 ACIN1Q9UKV3 1341 aaKnown RBP30.37■■■□□ 2.45
SYNGAP1-227ENST00000638142 CLIP1P30622 1438 aa30.35■■■□□ 2.45
SYNGAP1-227ENST00000638142 VPS8Q8N3P4 1428 aa30.29■■■□□ 2.44
SYNGAP1-227ENST00000638142 NEUROD1Q13562 356 aa30.22■■■□□ 2.43
SYNGAP1-227ENST00000638142 TOP2BQ02880 1626 aa30.21■■■□□ 2.43
SYNGAP1-227ENST00000638142 RAPGEF2Q9Y4G8 1499 aa30.21■■■□□ 2.43
SYNGAP1-227ENST00000638142 CENPBP07199 599 aaPredicted RBP30.21■■■□□ 2.43
SYNGAP1-227ENST00000638142 ZNF316A6NFI3 1004 aaPredicted RBP30.19■■■□□ 2.42
SYNGAP1-227ENST00000638142 BIVM-ERCC5R4GMW8 1640 aa30.12■■■□□ 2.41
SYNGAP1-227ENST00000638142 APLP2Q06481 763 aa30.09■■■□□ 2.41
SYNGAP1-227ENST00000638142 HNRNPUL2Q1KMD3 747 aaKnown RBP30.07■■■□□ 2.4
SYNGAP1-227ENST00000638142 ERICH3Q5RHP9 1530 aa30.04■■■□□ 2.4
SYNGAP1-227ENST00000638142 GTF3C3Q9Y5Q9 886 aa29.97■■■□□ 2.39
SYNGAP1-227ENST00000638142 PRXQ9BXM0 1461 aa29.96■■■□□ 2.39
SYNGAP1-227ENST00000638142 HMGXB3Q12766 1538 aa29.95■■■□□ 2.38
SYNGAP1-227ENST00000638142 NCAPD3P42695 1498 aa29.89■■■□□ 2.38
SYNGAP1-227ENST00000638142 ARAP1Q96P48 1450 aa29.84■■■□□ 2.37
SYNGAP1-227ENST00000638142 RANGAP1P46060 587 aaPredicted RBP29.82■■■□□ 2.36
SYNGAP1-227ENST00000638142 CUX1P39880 1505 aa29.8■■■□□ 2.36
SYNGAP1-227ENST00000638142 CLSPNQ9HAW4 1339 aa29.8■■■□□ 2.36
SYNGAP1-227ENST00000638142 KIF27Q86VH2 1401 aa29.77■■■□□ 2.36
SYNGAP1-227ENST00000638142 CFTRP13569 1480 aa29.71■■■□□ 2.35
SYNGAP1-227ENST00000638142 MIER1Q8N108 512 aa29.7■■■□□ 2.34
SYNGAP1-227ENST00000638142 DHX57Q6P158 1386 aaKnown RBP29.65■■■□□ 2.34
SYNGAP1-227ENST00000638142 RRBP1Q9P2E9 1410 aaKnown RBP29.64■■■□□ 2.34
SYNGAP1-227ENST00000638142 KANK4Q5T7N3 995 aaPredicted RBP29.61■■■□□ 2.33
SYNGAP1-227ENST00000638142 YTHDC1Q96MU7 727 aaKnown RBP29.59■■■□□ 2.33
SYNGAP1-227ENST00000638142 MYT1Q01538 1121 aa29.56■■■□□ 2.32
SYNGAP1-227ENST00000638142 ARHGAP35Q9NRY4 1499 aa29.55■■■□□ 2.32
SYNGAP1-227ENST00000638142 PRDM2Q13029 1718 aa29.54■■■□□ 2.32
SYNGAP1-227ENST00000638142 CUX2O14529 1486 aa29.54■■■□□ 2.32
SYNGAP1-227ENST00000638142 CCNB3Q8WWL7 1395 aa29.46■■■□□ 2.31
SYNGAP1-227ENST00000638142 MAP3K1Q13233 1512 aa29.38■■■□□ 2.29
SYNGAP1-227ENST00000638142 IGF1RP08069 1367 aa29.37■■■□□ 2.29
SYNGAP1-227ENST00000638142 DNAJC5BQ9UF47 199 aa29.35■■■□□ 2.29
SYNGAP1-227ENST00000638142 TIAM1Q13009 1591 aa29.31■■■□□ 2.28
SYNGAP1-227ENST00000638142 CADPSQ9ULU8 1353 aa29.3■■■□□ 2.28
SYNGAP1-227ENST00000638142 CARMIL1Q5VZK9 1371 aa29.26■■■□□ 2.27
SYNGAP1-227ENST00000638142 FGD5Q6ZNL6 1462 aa29.24■■■□□ 2.27
SYNGAP1-227ENST00000638142 LRRC9Q6ZRR7 1453 aa29.18■■■□□ 2.26
SYNGAP1-227ENST00000638142 RAB3GAP2Q9H2M9 1393 aa29.18■■■□□ 2.26
SYNGAP1-227ENST00000638142 FHAD1B1AJZ9 1412 aa29.16■■■□□ 2.26
SYNGAP1-227ENST00000638142 ITGAEP38570 1179 aa29.14■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms