RNA–Protein interactions for RNA: ENST00000634712.2

LINC00339-207, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-207ENST00000634712 NISCHQ9Y2I1 1504 aa38.09■■■■□ 3.69
LINC00339-207ENST00000634712 CCDC180Q9P1Z9 1646 aa33.87■■■■□ 3.01
LINC00339-207ENST00000634712 ABCC9O60706 1549 aa33.38■■■□□ 2.93
LINC00339-207ENST00000634712 DCAF8L2P0C7V8 631 aa32.1■■■□□ 2.73
LINC00339-207ENST00000634712 RB1CC1Q8TDY2 1594 aa32.02■■■□□ 2.72
LINC00339-207ENST00000634712 NACADO15069 1562 aa31.94■■■□□ 2.7
LINC00339-207ENST00000634712 ZCCHC6Q5VYS8 1495 aaKnown RBP31.66■■■□□ 2.66
LINC00339-207ENST00000634712 MYO15BQ96JP2 1530 aa31.65■■■□□ 2.66
LINC00339-207ENST00000634712 DCAF1Q9Y4B6 1507 aa31.48■■■□□ 2.63
LINC00339-207ENST00000634712 PABPN1Q86U42 306 aaKnown RBP eCLIP31.23■■■□□ 2.59
LINC00339-207ENST00000634712 UNC13AQ9UPW8 1703 aa31.21■■■□□ 2.59
LINC00339-207ENST00000634712 BICRAQ9NZM4 1560 aa30.98■■■□□ 2.55
LINC00339-207ENST00000634712 SCRIBQ14160 1630 aa30.95■■■□□ 2.55
LINC00339-207ENST00000634712 DNAJC5BQ9UF47 199 aa30.76■■■□□ 2.51
LINC00339-207ENST00000634712 SHROOM4Q9ULL8 1493 aa30.68■■■□□ 2.5
LINC00339-207ENST00000634712 EIF4G1Q04637 1599 aaKnown RBP30.22■■■□□ 2.43
LINC00339-207ENST00000634712 CC2D2AQ9P2K1 1620 aa30.14■■■□□ 2.42
LINC00339-207ENST00000634712 CECR2Q9BXF3 1484 aa30.01■■■□□ 2.39
LINC00339-207ENST00000634712 SMARCA4P51532 1647 aa29.57■■■□□ 2.32
LINC00339-207ENST00000634712 BAZ1AQ9NRL2 1556 aaPredicted RBP29.54■■■□□ 2.32
LINC00339-207ENST00000634712 NCAPD3P42695 1498 aa29.47■■■□□ 2.31
LINC00339-207ENST00000634712 ATAD2BQ9ULI0 1458 aa29.46■■■□□ 2.31
LINC00339-207ENST00000634712 SMARCA2P51531 1590 aa29.44■■■□□ 2.3
LINC00339-207ENST00000634712 MROH2BQ7Z745 1585 aa29.34■■■□□ 2.29
LINC00339-207ENST00000634712 HMGXB3Q12766 1538 aa29.28■■■□□ 2.28
LINC00339-207ENST00000634712 BAZ1BQ9UIG0 1483 aaKnown RBP29.25■■■□□ 2.27
LINC00339-207ENST00000634712 PEG3Q9GZU2 1588 aa29.25■■■□□ 2.27
LINC00339-207ENST00000634712 WIZO95785 1651 aa29.02■■■□□ 2.24
LINC00339-207ENST00000634712 RSF1Q96T23 1441 aaPredicted RBP28.98■■■□□ 2.23
LINC00339-207ENST00000634712 ERCC6Q03468 1493 aa28.83■■■□□ 2.21
LINC00339-207ENST00000634712 NESP48681 1621 aa28.81■■■□□ 2.2
LINC00339-207ENST00000634712 LAMC3Q9Y6N6 1575 aa28.71■■■□□ 2.19
LINC00339-207ENST00000634712 TOP2AP11388 1531 aaKnown RBP28.7■■■□□ 2.18
LINC00339-207ENST00000634712 CADPSQ9ULU8 1353 aa28.65■■■□□ 2.18
LINC00339-207ENST00000634712 PDS5BQ9NTI5 1447 aa28.6■■■□□ 2.17
LINC00339-207ENST00000634712 CUX2O14529 1486 aa28.51■■■□□ 2.15
LINC00339-207ENST00000634712 KIF21AQ7Z4S6 1674 aa28.43■■■□□ 2.14
LINC00339-207ENST00000634712 CFTRP13569 1480 aa28.41■■■□□ 2.14
LINC00339-207ENST00000634712 CCDC88BA6NC98 1476 aa28.4■■■□□ 2.14
LINC00339-207ENST00000634712 THOC2Q8NI27 1593 aaKnown RBP28.34■■■□□ 2.13
LINC00339-207ENST00000634712 FANCD2Q9BXW9 1451 aa28.3■■■□□ 2.12
LINC00339-207ENST00000634712 CEP164Q9UPV0 1460 aa28.29■■■□□ 2.12
LINC00339-207ENST00000634712 SUPT5HO00267 1087 aaKnown RBP28.28■■■□□ 2.12
LINC00339-207ENST00000634712 MRC2Q9UBG0 1479 aa28.26■■■□□ 2.11
LINC00339-207ENST00000634712 WDR62O43379 1518 aa28.13■■■□□ 2.09
LINC00339-207ENST00000634712 PRDM2Q13029 1718 aa28.12■■■□□ 2.09
LINC00339-207ENST00000634712 URB2Q14146 1524 aaKnown RBP27.99■■■□□ 2.07
LINC00339-207ENST00000634712 ABCC8Q09428 1581 aa27.86■■■□□ 2.05
LINC00339-207ENST00000634712 DNAJC5Q9H3Z4 198 aa27.86■■■□□ 2.05
LINC00339-207ENST00000634712 TOPBP1Q92547 1522 aa27.82■■■□□ 2.04
LINC00339-207ENST00000634712 DNMBPQ6XZF7 1577 aa27.76■■■□□ 2.03
LINC00339-207ENST00000634712 IFT140Q96RY7 1462 aa27.7■■■□□ 2.03
LINC00339-207ENST00000634712 POLA1P09884 1462 aaPredicted RBP27.57■■■□□ 2
LINC00339-207ENST00000634712 ZNF608Q9ULD9 1512 aaPredicted RBP27.56■■■□□ 2
LINC00339-207ENST00000634712 CUX1P39880 1505 aa27.53■■■□□ 2
LINC00339-207ENST00000634712 SOGA1O94964 1423 aa27.52■■■□□ 2
LINC00339-207ENST00000634712 FGD5Q6ZNL6 1462 aa27.48■■□□□ 1.99
LINC00339-207ENST00000634712 TARBP1Q13395 1621 aaKnown RBP27.48■■□□□ 1.99
LINC00339-207ENST00000634712 RAD54L2Q9Y4B4 1467 aa27.48■■□□□ 1.99
LINC00339-207ENST00000634712 AQRO60306 1485 aaKnown RBP eCLIP27.43■■□□□ 1.98
LINC00339-207ENST00000634712 EIF4G3O43432 1585 aaKnown RBP27.41■■□□□ 1.98
LINC00339-207ENST00000634712 OSCARQ8IYS5 282 aa27.41■■□□□ 1.98
LINC00339-207ENST00000634712 TDRD9Q8NDG6 1382 aaKnown RBP27.38■■□□□ 1.97
LINC00339-207ENST00000634712 WRNQ14191 1432 aaPredicted RBP eCLIP27.36■■□□□ 1.97
LINC00339-207ENST00000634712 WDR97A6NE52 1622 aa27.27■■□□□ 1.96
LINC00339-207ENST00000634712 TOP2BQ02880 1626 aa27.26■■□□□ 1.95
LINC00339-207ENST00000634712 FBLN2P98095 1184 aa27.25■■□□□ 1.95
LINC00339-207ENST00000634712 SYNJ1O43426 1573 aa27.23■■□□□ 1.95
LINC00339-207ENST00000634712 BIVM-ERCC5R4GMW8 1640 aa27.23■■□□□ 1.95
LINC00339-207ENST00000634712 ABCA10Q8WWZ4 1543 aa27.2■■□□□ 1.95
LINC00339-207ENST00000634712 GRIN2BQ13224 1484 aa27.18■■□□□ 1.94
LINC00339-207ENST00000634712 GAPVD1Q14C86 1478 aa27.17■■□□□ 1.94
LINC00339-207ENST00000634712 SNAPC4Q5SXM2 1469 aa27.15■■□□□ 1.94
LINC00339-207ENST00000634712 CHMP7Q8WUX9 453 aaPredicted RBP27.13■■□□□ 1.93
LINC00339-207ENST00000634712 MAGI1Q96QZ7 1491 aaPredicted RBP27.11■■□□□ 1.93
LINC00339-207ENST00000634712 CHD1O14646 1710 aa27.1■■□□□ 1.93
LINC00339-207ENST00000634712 ABCA5Q8WWZ7 1642 aa27.07■■□□□ 1.92
LINC00339-207ENST00000634712 PBRM1Q86U86 1689 aa27.05■■□□□ 1.92
LINC00339-207ENST00000634712 SYNJ2O15056 1496 aa27.01■■□□□ 1.91
LINC00339-207ENST00000634712 TRIM41Q8WV44 630 aa26.97■■□□□ 1.91
LINC00339-207ENST00000634712 ERICH3Q5RHP9 1530 aa26.89■■□□□ 1.89
LINC00339-207ENST00000634712 RIMBP3CA6NJZ7 1639 aa26.86■■□□□ 1.89
LINC00339-207ENST00000634712 RIMBP3BA6NNM3 1639 aa26.86■■□□□ 1.89
LINC00339-207ENST00000634712 RIMBP3Q9UFD9 1639 aa26.86■■□□□ 1.89
LINC00339-207ENST00000634712 ARHGEF11O15085 1522 aa26.86■■□□□ 1.89
LINC00339-207ENST00000634712 FHAD1B1AJZ9 1412 aa26.85■■□□□ 1.89
LINC00339-207ENST00000634712 ADAMTS12P58397 1594 aa26.83■■□□□ 1.89
LINC00339-207ENST00000634712 KIF27Q86VH2 1401 aa26.82■■□□□ 1.88
LINC00339-207ENST00000634712 GRIN2AQ12879 1464 aa26.81■■□□□ 1.88
LINC00339-207ENST00000634712 CLASP1Q7Z460 1538 aa26.79■■□□□ 1.88
LINC00339-207ENST00000634712 CYB5RLQ6IPT4 315 aa26.73■■□□□ 1.87
LINC00339-207ENST00000634712 IGF1RP08069 1367 aa26.72■■□□□ 1.87
LINC00339-207ENST00000634712 NUP160Q12769 1436 aa26.67■■□□□ 1.86
LINC00339-207ENST00000634712 CEP170Q5SW79 1584 aa26.65■■□□□ 1.86
LINC00339-207ENST00000634712 ARAP1Q96P48 1450 aa26.61■■□□□ 1.85
LINC00339-207ENST00000634712 CUL7Q14999 1698 aa26.6■■□□□ 1.85
LINC00339-207ENST00000634712 CARMIL1Q5VZK9 1371 aa26.58■■□□□ 1.85
LINC00339-207ENST00000634712 JPH4Q96JJ6 628 aa26.51■■□□□ 1.83
LINC00339-207ENST00000634712 RUSC2Q8N2Y8 1516 aa26.48■■□□□ 1.83
LINC00339-207ENST00000634712 SHROOM2Q13796 1616 aa26.45■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 436.6 ms