RNA–Protein interactions for RNA: ENST00000546881.1

RAB5C-203, Transcript of RAB5C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB5C, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5C-203ENST00000546881 NISCHQ9Y2I1 1504 aa28.73■■■□□ 2.19
RAB5C-203ENST00000546881 ABCC9O60706 1549 aa25.93■■□□□ 1.74
RAB5C-203ENST00000546881 CCDC180Q9P1Z9 1646 aa25.79■■□□□ 1.72
RAB5C-203ENST00000546881 RB1CC1Q8TDY2 1594 aa24.61■■□□□ 1.53
RAB5C-203ENST00000546881 DCAF8L2P0C7V8 631 aa24.41■■□□□ 1.5
RAB5C-203ENST00000546881 NACADO15069 1562 aa24.4■■□□□ 1.5
RAB5C-203ENST00000546881 DNAJC5BQ9UF47 199 aa24.32■■□□□ 1.48
RAB5C-203ENST00000546881 PABPN1Q86U42 306 aaKnown RBP eCLIP24.15■■□□□ 1.46
RAB5C-203ENST00000546881 UNC13AQ9UPW8 1703 aa24.04■■□□□ 1.44
RAB5C-203ENST00000546881 MYO15BQ96JP2 1530 aa23.98■■□□□ 1.43
RAB5C-203ENST00000546881 BICRAQ9NZM4 1560 aa23.86■■□□□ 1.41
RAB5C-203ENST00000546881 ZCCHC6Q5VYS8 1495 aaKnown RBP23.79■■□□□ 1.4
RAB5C-203ENST00000546881 DCAF1Q9Y4B6 1507 aa23.67■■□□□ 1.38
RAB5C-203ENST00000546881 SCRIBQ14160 1630 aa23.58■■□□□ 1.36
RAB5C-203ENST00000546881 SHROOM4Q9ULL8 1493 aa23.49■■□□□ 1.35
RAB5C-203ENST00000546881 CC2D2AQ9P2K1 1620 aa23.38■■□□□ 1.33
RAB5C-203ENST00000546881 CECR2Q9BXF3 1484 aa23.34■■□□□ 1.33
RAB5C-203ENST00000546881 EIF4G1Q04637 1599 aaKnown RBP23.31■■□□□ 1.32
RAB5C-203ENST00000546881 NCAPD3P42695 1498 aa22.51■■□□□ 1.19
RAB5C-203ENST00000546881 ATAD2BQ9ULI0 1458 aa22.46■■□□□ 1.19
RAB5C-203ENST00000546881 SMARCA4P51532 1647 aa22.43■■□□□ 1.18
RAB5C-203ENST00000546881 ERCC6Q03468 1493 aa22.41■■□□□ 1.18
RAB5C-203ENST00000546881 SMARCA2P51531 1590 aa22.4■■□□□ 1.18
RAB5C-203ENST00000546881 DNAJC5Q9H3Z4 198 aa22.37■■□□□ 1.17
RAB5C-203ENST00000546881 HMGXB3Q12766 1538 aa22.35■■□□□ 1.17
RAB5C-203ENST00000546881 BAZ1AQ9NRL2 1556 aaPredicted RBP22.31■■□□□ 1.16
RAB5C-203ENST00000546881 CUX2O14529 1486 aa22.31■■□□□ 1.16
RAB5C-203ENST00000546881 BAZ1BQ9UIG0 1483 aaKnown RBP22.28■■□□□ 1.16
RAB5C-203ENST00000546881 NESP48681 1621 aa22.24■■□□□ 1.15
RAB5C-203ENST00000546881 MROH2BQ7Z745 1585 aa22.16■■□□□ 1.14
RAB5C-203ENST00000546881 PEG3Q9GZU2 1588 aa22.16■■□□□ 1.14
RAB5C-203ENST00000546881 LAMC3Q9Y6N6 1575 aa22.04■■□□□ 1.12
RAB5C-203ENST00000546881 THOC2Q8NI27 1593 aaKnown RBP21.99■■□□□ 1.11
RAB5C-203ENST00000546881 KIF21AQ7Z4S6 1674 aa21.95■■□□□ 1.1
RAB5C-203ENST00000546881 PDS5BQ9NTI5 1447 aa21.93■■□□□ 1.1
RAB5C-203ENST00000546881 WIZO95785 1651 aa21.91■■□□□ 1.1
RAB5C-203ENST00000546881 CADPSQ9ULU8 1353 aa21.85■■□□□ 1.09
RAB5C-203ENST00000546881 MRC2Q9UBG0 1479 aa21.75■■□□□ 1.07
RAB5C-203ENST00000546881 WDR62O43379 1518 aa21.67■■□□□ 1.06
RAB5C-203ENST00000546881 CEP164Q9UPV0 1460 aa21.66■■□□□ 1.06
RAB5C-203ENST00000546881 RSF1Q96T23 1441 aaPredicted RBP21.66■■□□□ 1.06
RAB5C-203ENST00000546881 FANCD2Q9BXW9 1451 aa21.63■■□□□ 1.05
RAB5C-203ENST00000546881 TOP2AP11388 1531 aaKnown RBP21.6■■□□□ 1.05
RAB5C-203ENST00000546881 CFTRP13569 1480 aa21.58■■□□□ 1.04
RAB5C-203ENST00000546881 TRIM41Q8WV44 630 aa21.48■■□□□ 1.03
RAB5C-203ENST00000546881 URB2Q14146 1524 aaKnown RBP21.45■■□□□ 1.02
RAB5C-203ENST00000546881 PRDM2Q13029 1718 aa21.37■■□□□ 1.01
RAB5C-203ENST00000546881 CCDC88BA6NC98 1476 aa21.37■■□□□ 1.01
RAB5C-203ENST00000546881 OSCARQ8IYS5 282 aa21.32■■□□□ 1
RAB5C-203ENST00000546881 IFT140Q96RY7 1462 aa21.21■□□□□ 0.99
RAB5C-203ENST00000546881 TOPBP1Q92547 1522 aa21.2■□□□□ 0.98
RAB5C-203ENST00000546881 ZNF608Q9ULD9 1512 aaPredicted RBP21.2■□□□□ 0.98
RAB5C-203ENST00000546881 ABCC8Q09428 1581 aa21.13■□□□□ 0.97
RAB5C-203ENST00000546881 DNMBPQ6XZF7 1577 aa21.12■□□□□ 0.97
RAB5C-203ENST00000546881 EIF4G3O43432 1585 aaKnown RBP21.09■□□□□ 0.97
RAB5C-203ENST00000546881 RIMBP3CA6NJZ7 1639 aa21.04■□□□□ 0.96
RAB5C-203ENST00000546881 RIMBP3BA6NNM3 1639 aa21.04■□□□□ 0.96
RAB5C-203ENST00000546881 RIMBP3Q9UFD9 1639 aa21.04■□□□□ 0.96
RAB5C-203ENST00000546881 AQRO60306 1485 aaKnown RBP eCLIP21.01■□□□□ 0.954e-6■■■■■ 31
RAB5C-203ENST00000546881 TARBP1Q13395 1621 aaKnown RBP21■□□□□ 0.95
RAB5C-203ENST00000546881 POLA1P09884 1462 aaPredicted RBP20.98■□□□□ 0.95
RAB5C-203ENST00000546881 ARHGEF11O15085 1522 aa20.97■□□□□ 0.95
RAB5C-203ENST00000546881 FBLN2P98095 1184 aa20.96■□□□□ 0.95
RAB5C-203ENST00000546881 CHD1O14646 1710 aa20.95■□□□□ 0.94
RAB5C-203ENST00000546881 RAD54L2Q9Y4B4 1467 aa20.94■□□□□ 0.94
RAB5C-203ENST00000546881 SOGA1O94964 1423 aa20.9■□□□□ 0.94
RAB5C-203ENST00000546881 TDRD9Q8NDG6 1382 aaKnown RBP20.88■□□□□ 0.93
RAB5C-203ENST00000546881 CYB5RLQ6IPT4 315 aa20.86■□□□□ 0.93
RAB5C-203ENST00000546881 FGD5Q6ZNL6 1462 aa20.86■□□□□ 0.93
RAB5C-203ENST00000546881 CUX1P39880 1505 aa20.82■□□□□ 0.92
RAB5C-203ENST00000546881 SNAPC4Q5SXM2 1469 aa20.8■□□□□ 0.92
RAB5C-203ENST00000546881 SUPT5HO00267 1087 aaKnown RBP20.77■□□□□ 0.92
RAB5C-203ENST00000546881 ARAP1Q96P48 1450 aa20.75■□□□□ 0.91
RAB5C-203ENST00000546881 WDR97A6NE52 1622 aa20.75■□□□□ 0.91
RAB5C-203ENST00000546881 CHMP7Q8WUX9 453 aaPredicted RBP20.75■□□□□ 0.91
RAB5C-203ENST00000546881 GRIN2BQ13224 1484 aa20.72■□□□□ 0.91
RAB5C-203ENST00000546881 MAGI1Q96QZ7 1491 aaPredicted RBP20.7■□□□□ 0.9
RAB5C-203ENST00000546881 TRHP20396 242 aaPredicted RBP20.69■□□□□ 0.9
RAB5C-203ENST00000546881 SYNJ1O43426 1573 aa20.68■□□□□ 0.9
RAB5C-203ENST00000546881 CLASP1Q7Z460 1538 aa20.67■□□□□ 0.9
RAB5C-203ENST00000546881 SYNJ2O15056 1496 aa20.65■□□□□ 0.9
RAB5C-203ENST00000546881 PBRM1Q86U86 1689 aa20.64■□□□□ 0.9
RAB5C-203ENST00000546881 GAPVD1Q14C86 1478 aa20.64■□□□□ 0.89
RAB5C-203ENST00000546881 ABCA10Q8WWZ4 1543 aa20.58■□□□□ 0.89
RAB5C-203ENST00000546881 ABCA5Q8WWZ7 1642 aa20.56■□□□□ 0.88
RAB5C-203ENST00000546881 WRNQ14191 1432 aaPredicted RBP eCLIP20.52■□□□□ 0.87
RAB5C-203ENST00000546881 TOP2BQ02880 1626 aa20.45■□□□□ 0.87
RAB5C-203ENST00000546881 BIVM-ERCC5R4GMW8 1640 aa20.45■□□□□ 0.87
RAB5C-203ENST00000546881 GRIN2AQ12879 1464 aa20.44■□□□□ 0.86
RAB5C-203ENST00000546881 ADAMTS12P58397 1594 aa20.43■□□□□ 0.86
RAB5C-203ENST00000546881 CEP170Q5SW79 1584 aa20.38■□□□□ 0.85
RAB5C-203ENST00000546881 ERCC6L2Q5T890 1561 aa20.38■□□□□ 0.85
RAB5C-203ENST00000546881 FHAD1B1AJZ9 1412 aa20.36■□□□□ 0.85
RAB5C-203ENST00000546881 NUP160Q12769 1436 aa20.36■□□□□ 0.85
RAB5C-203ENST00000546881 ERICH3Q5RHP9 1530 aa20.32■□□□□ 0.84
RAB5C-203ENST00000546881 SHROOM2Q13796 1616 aa20.27■□□□□ 0.83
RAB5C-203ENST00000546881 PRG4Q92954 1404 aaPredicted RBP20.21■□□□□ 0.83
RAB5C-203ENST00000546881 JPH4Q96JJ6 628 aa20.18■□□□□ 0.82
RAB5C-203ENST00000546881 RUSC2Q8N2Y8 1516 aa20.14■□□□□ 0.81
RAB5C-203ENST00000546881 AEBP2Q6ZN18 517 aaPredicted RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms