RNA–Protein interactions for RNA: ENST00000527881.1

TSKU-203, Transcript of tsukushi, small leucine rich proteoglycan, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TSKU, Length 3,554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSKU-203ENST00000527881 NISCHQ9Y2I1 1504 aa22.49■■□□□ 1.19
TSKU-203ENST00000527881 HRCP23327 699 aa21.08■□□□□ 0.97
TSKU-203ENST00000527881 PPARGC1BQ86YN6 1023 aaKnown RBP20.79■□□□□ 0.92
TSKU-203ENST00000527881 PCGF6Q9BYE7 350 aa20.77■□□□□ 0.92
TSKU-203ENST00000527881 SUPT5HO00267 1087 aaKnown RBP20.71■□□□□ 0.91
TSKU-203ENST00000527881 PELP1Q8IZL8 1130 aaKnown RBP20.69■□□□□ 0.9
TSKU-203ENST00000527881 SHROOM4Q9ULL8 1493 aa20.63■□□□□ 0.89
TSKU-203ENST00000527881 MYO15BQ96JP2 1530 aa20.18■□□□□ 0.82
TSKU-203ENST00000527881 CHIC1Q5VXU3 224 aa20.15■□□□□ 0.82
TSKU-203ENST00000527881 SCAF1Q9H7N4 1312 aaKnown RBP20.08■□□□□ 0.8
TSKU-203ENST00000527881 MYT1Q01538 1121 aa19.94■□□□□ 0.78
TSKU-203ENST00000527881 TRIM26Q12899 539 aaPredicted RBP19.89■□□□□ 0.77
TSKU-203ENST00000527881 LOC105371045A0A1W2PR82 267 aa19.87■□□□□ 0.77
TSKU-203ENST00000527881 ZEB1P37275 1124 aaPredicted RBP19.81■□□□□ 0.76
TSKU-203ENST00000527881 DCAF1Q9Y4B6 1507 aa19.75■□□□□ 0.75
TSKU-203ENST00000527881 ACIN1Q9UKV3 1341 aaKnown RBP19.55■□□□□ 0.72
TSKU-203ENST00000527881 GTF3C3Q9Y5Q9 886 aa19.52■□□□□ 0.71
TSKU-203ENST00000527881 NEUROD1Q13562 356 aa19.51■□□□□ 0.71
TSKU-203ENST00000527881 CCDC180Q9P1Z9 1646 aa19.5■□□□□ 0.71
TSKU-203ENST00000527881 DCAF8L2P0C7V8 631 aa19.49■□□□□ 0.71
TSKU-203ENST00000527881 CENPBP07199 599 aaPredicted RBP19.45■□□□□ 0.7
TSKU-203ENST00000527881 EHMT2Q96KQ7 1210 aa19.33■□□□□ 0.68
TSKU-203ENST00000527881 FAM9AQ8IZU1 332 aaPredicted RBP19.23■□□□□ 0.67
TSKU-203ENST00000527881 CCER1Q8TC90 406 aaPredicted RBP19.21■□□□□ 0.67
TSKU-203ENST00000527881 DIEXFQ68CQ4 756 aaKnown RBP19.21■□□□□ 0.67
TSKU-203ENST00000527881 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.17■□□□□ 0.66
TSKU-203ENST00000527881 YTHDC1Q96MU7 727 aaKnown RBP19.15■□□□□ 0.66
TSKU-203ENST00000527881 ZCCHC6Q5VYS8 1495 aaKnown RBP19.11■□□□□ 0.65
TSKU-203ENST00000527881 TRIM41Q8WV44 630 aa19.03■□□□□ 0.64
TSKU-203ENST00000527881 TTBK1Q5TCY1 1321 aaPredicted RBP18.89■□□□□ 0.61
TSKU-203ENST00000527881 ZNF316A6NFI3 1004 aaPredicted RBP18.72■□□□□ 0.59
TSKU-203ENST00000527881 BCL11AQ9H165 835 aa18.69■□□□□ 0.58
TSKU-203ENST00000527881 MIER1Q8N108 512 aa18.65■□□□□ 0.58
TSKU-203ENST00000527881 ANP32EQ9BTT0 268 aa18.55■□□□□ 0.56
TSKU-203ENST00000527881 SUPT16HQ9Y5B9 1047 aaKnown RBP18.42■□□□□ 0.54
TSKU-203ENST00000527881 CSRNP3Q8WYN3 585 aa18.39■□□□□ 0.53
TSKU-203ENST00000527881 TSHZ2Q9NRE2 1034 aa18.37■□□□□ 0.53
TSKU-203ENST00000527881 HNRNPUL2Q1KMD3 747 aaKnown RBP18.32■□□□□ 0.52
TSKU-203ENST00000527881 BCANQ96GW7 911 aa18.29■□□□□ 0.52
TSKU-203ENST00000527881 RSF1Q96T23 1441 aaPredicted RBP18.28■□□□□ 0.52
TSKU-203ENST00000527881 CLSPNQ9HAW4 1339 aa18.27■□□□□ 0.52
TSKU-203ENST00000527881 RB1CC1Q8TDY2 1594 aa18.23■□□□□ 0.51
TSKU-203ENST00000527881 ABCC9O60706 1549 aa18.18■□□□□ 0.5
TSKU-203ENST00000527881 UBTFP17480 764 aaKnown RBP18.15■□□□□ 0.5
TSKU-203ENST00000527881 CEP162Q5TB80 1403 aa18.05■□□□□ 0.48
TSKU-203ENST00000527881 FKBP8Q14318 412 aa18.05■□□□□ 0.48
TSKU-203ENST00000527881 ERICH6Q7L0X2 663 aa18.03■□□□□ 0.48
TSKU-203ENST00000527881 NEFLP07196 543 aa18.01■□□□□ 0.47
TSKU-203ENST00000527881 WRNQ14191 1432 aaPredicted RBP eCLIP17.99■□□□□ 0.47
TSKU-203ENST00000527881 RBM19Q9Y4C8 960 aaKnown RBP17.98■□□□□ 0.47
TSKU-203ENST00000527881 PRKCSHP14314 528 aaPredicted RBP17.97■□□□□ 0.47
TSKU-203ENST00000527881 APLP2Q06481 763 aa17.97■□□□□ 0.47
TSKU-203ENST00000527881 ITGAEP38570 1179 aa17.94■□□□□ 0.46
TSKU-203ENST00000527881 SCRIBQ14160 1630 aa17.93■□□□□ 0.46
TSKU-203ENST00000527881 RANGAP1P46060 587 aaPredicted RBP17.89■□□□□ 0.45
TSKU-203ENST00000527881 KCNH8Q96L42 1107 aa17.89■□□□□ 0.45
TSKU-203ENST00000527881 TNIKQ9UKE5 1360 aa17.84■□□□□ 0.45
TSKU-203ENST00000527881 SOGA1O94964 1423 aa17.75■□□□□ 0.43
TSKU-203ENST00000527881 MSH5O43196 834 aa17.74■□□□□ 0.43
TSKU-203ENST00000527881 CCDC88BA6NC98 1476 aa17.73■□□□□ 0.43
TSKU-203ENST00000527881 TRIM52Q96A61 297 aa17.73■□□□□ 0.43
TSKU-203ENST00000527881 CECR2Q9BXF3 1484 aa17.72■□□□□ 0.43
TSKU-203ENST00000527881 ABCC8Q09428 1581 aa17.69■□□□□ 0.42
TSKU-203ENST00000527881 DDX10Q13206 875 aaKnown RBP17.68■□□□□ 0.42
TSKU-203ENST00000527881 CDK11AQ9UQ88 783 aaPredicted RBP17.67■□□□□ 0.42
TSKU-203ENST00000527881 MROH2BQ7Z745 1585 aa17.66■□□□□ 0.42
TSKU-203ENST00000527881 DEKP35659 375 aaKnown RBP17.65■□□□□ 0.42
TSKU-203ENST00000527881 DHX57Q6P158 1386 aaKnown RBP17.62■□□□□ 0.41
TSKU-203ENST00000527881 IRX6P78412 446 aaPredicted RBP17.61■□□□□ 0.41
TSKU-203ENST00000527881 GOLGA3Q08378 1498 aa17.6■□□□□ 0.41
TSKU-203ENST00000527881 WIZO95785 1651 aa17.59■□□□□ 0.41
TSKU-203ENST00000527881 RUSC2Q8N2Y8 1516 aa17.59■□□□□ 0.41
TSKU-203ENST00000527881 CLIP1P30622 1438 aa17.58■□□□□ 0.4
TSKU-203ENST00000527881 MYT1LQ9UL68 1186 aa17.57■□□□□ 0.4
TSKU-203ENST00000527881 NBR1Q14596 966 aa17.56■□□□□ 0.4
TSKU-203ENST00000527881 ANO8Q9HCE9 1232 aaPredicted RBP17.55■□□□□ 0.4
TSKU-203ENST00000527881 FANCIQ9NVI1 1328 aa17.54■□□□□ 0.4
TSKU-203ENST00000527881 EEA1Q15075 1411 aa17.53■□□□□ 0.4
TSKU-203ENST00000527881 ANP32CO43423 234 aa17.51■□□□□ 0.39
TSKU-203ENST00000527881 HIRIP3Q9BW71 556 aaPredicted RBP17.51■□□□□ 0.39
TSKU-203ENST00000527881 VPS8Q8N3P4 1428 aa17.48■□□□□ 0.39
TSKU-203ENST00000527881 HNRNPUQ00839 825 aaKnown RBP eCLIP17.41■□□□□ 0.38
TSKU-203ENST00000527881 RTL5Q5HYW3 569 aaPredicted RBP17.4■□□□□ 0.38
TSKU-203ENST00000527881 CCDC136Q96JN2 1154 aa17.39■□□□□ 0.37
TSKU-203ENST00000527881 CEP164Q9UPV0 1460 aa17.38■□□□□ 0.37
TSKU-203ENST00000527881 RTN4Q9NQC3 1192 aaKnown RBP17.37■□□□□ 0.37
TSKU-203ENST00000527881 SALL2Q9Y467 1007 aaPredicted RBP17.37■□□□□ 0.37
TSKU-203ENST00000527881 EIF4G1Q04637 1599 aaKnown RBP17.36■□□□□ 0.37
TSKU-203ENST00000527881 BAZ1AQ9NRL2 1556 aaPredicted RBP17.36■□□□□ 0.37
TSKU-203ENST00000527881 NOP58Q9Y2X3 529 aaKnown RBP17.35■□□□□ 0.37
TSKU-203ENST00000527881 CCER2I3L3R5 266 aa17.34■□□□□ 0.37
TSKU-203ENST00000527881 KANK4Q5T7N3 995 aaPredicted RBP17.34■□□□□ 0.37
TSKU-203ENST00000527881 SIN3AQ96ST3 1273 aa17.32■□□□□ 0.36
TSKU-203ENST00000527881 B4GALNT3Q6L9W6 998 aa17.29■□□□□ 0.36
TSKU-203ENST00000527881 PPP1R15AO75807 674 aaPredicted RBP17.28■□□□□ 0.36
TSKU-203ENST00000527881 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.28■□□□□ 0.36
TSKU-203ENST00000527881 PPP4R2Q9NY27 417 aa17.27■□□□□ 0.35
TSKU-203ENST00000527881 PAK3O75914 559 aaPredicted RBP17.25■□□□□ 0.35
TSKU-203ENST00000527881 ERICH6BQ5W0A0 696 aa17.23■□□□□ 0.35
TSKU-203ENST00000527881 IL27Q8NEV9 243 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms