RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 NISCHQ9Y2I1 1504 aa32.77■■■□□ 2.84
LINC00339-202ENST00000416769 ABCC9O60706 1549 aa29.76■■■□□ 2.36
LINC00339-202ENST00000416769 CCDC180Q9P1Z9 1646 aa29.42■■■□□ 2.3
LINC00339-202ENST00000416769 DNAJC5BQ9UF47 199 aa28.15■■■□□ 2.1
LINC00339-202ENST00000416769 RB1CC1Q8TDY2 1594 aa28.09■■■□□ 2.09
LINC00339-202ENST00000416769 NACADO15069 1562 aa27.84■■■□□ 2.05
LINC00339-202ENST00000416769 DCAF8L2P0C7V8 631 aa27.78■■■□□ 2.04
LINC00339-202ENST00000416769 PABPN1Q86U42 306 aaKnown RBP eCLIP27.71■■■□□ 2.03
LINC00339-202ENST00000416769 UNC13AQ9UPW8 1703 aa27.61■■■□□ 2.01
LINC00339-202ENST00000416769 BICRAQ9NZM4 1560 aa27.42■■□□□ 1.98
LINC00339-202ENST00000416769 MYO15BQ96JP2 1530 aa27.33■■□□□ 1.97
LINC00339-202ENST00000416769 ZCCHC6Q5VYS8 1495 aaKnown RBP27.13■■□□□ 1.93
LINC00339-202ENST00000416769 SCRIBQ14160 1630 aa26.95■■□□□ 1.91
LINC00339-202ENST00000416769 DCAF1Q9Y4B6 1507 aa26.95■■□□□ 1.9
LINC00339-202ENST00000416769 CC2D2AQ9P2K1 1620 aa26.83■■□□□ 1.89
LINC00339-202ENST00000416769 SHROOM4Q9ULL8 1493 aa26.79■■□□□ 1.88
LINC00339-202ENST00000416769 CECR2Q9BXF3 1484 aa26.76■■□□□ 1.87
LINC00339-202ENST00000416769 EIF4G1Q04637 1599 aaKnown RBP26.71■■□□□ 1.87
LINC00339-202ENST00000416769 DNAJC5Q9H3Z4 198 aa25.81■■□□□ 1.72
LINC00339-202ENST00000416769 NCAPD3P42695 1498 aa25.73■■□□□ 1.71
LINC00339-202ENST00000416769 ATAD2BQ9ULI0 1458 aa25.69■■□□□ 1.7
LINC00339-202ENST00000416769 SMARCA4P51532 1647 aa25.63■■□□□ 1.69
LINC00339-202ENST00000416769 ERCC6Q03468 1493 aa25.6■■□□□ 1.69
LINC00339-202ENST00000416769 CUX2O14529 1486 aa25.57■■□□□ 1.68
LINC00339-202ENST00000416769 NESP48681 1621 aa25.55■■□□□ 1.68
LINC00339-202ENST00000416769 HMGXB3Q12766 1538 aa25.52■■□□□ 1.68
LINC00339-202ENST00000416769 SMARCA2P51531 1590 aa25.52■■□□□ 1.68
LINC00339-202ENST00000416769 BAZ1BQ9UIG0 1483 aaKnown RBP25.4■■□□□ 1.66
LINC00339-202ENST00000416769 BAZ1AQ9NRL2 1556 aaPredicted RBP25.39■■□□□ 1.66
LINC00339-202ENST00000416769 MROH2BQ7Z745 1585 aa25.33■■□□□ 1.65
LINC00339-202ENST00000416769 PEG3Q9GZU2 1588 aa25.31■■□□□ 1.64
LINC00339-202ENST00000416769 THOC2Q8NI27 1593 aaKnown RBP25.27■■□□□ 1.64
LINC00339-202ENST00000416769 KIF21AQ7Z4S6 1674 aa25.17■■□□□ 1.62
LINC00339-202ENST00000416769 LAMC3Q9Y6N6 1575 aa25.16■■□□□ 1.62
LINC00339-202ENST00000416769 WIZO95785 1651 aa25.03■■□□□ 1.6
LINC00339-202ENST00000416769 PDS5BQ9NTI5 1447 aa24.99■■□□□ 1.59
LINC00339-202ENST00000416769 CADPSQ9ULU8 1353 aa24.95■■□□□ 1.59
LINC00339-202ENST00000416769 MRC2Q9UBG0 1479 aa24.87■■□□□ 1.57
LINC00339-202ENST00000416769 WDR62O43379 1518 aa24.82■■□□□ 1.56
LINC00339-202ENST00000416769 CEP164Q9UPV0 1460 aa24.72■■□□□ 1.55
LINC00339-202ENST00000416769 FANCD2Q9BXW9 1451 aa24.71■■□□□ 1.55
LINC00339-202ENST00000416769 TRIM41Q8WV44 630 aa24.7■■□□□ 1.54
LINC00339-202ENST00000416769 RSF1Q96T23 1441 aaPredicted RBP24.69■■□□□ 1.54
LINC00339-202ENST00000416769 CFTRP13569 1480 aa24.64■■□□□ 1.54
LINC00339-202ENST00000416769 TOP2AP11388 1531 aaKnown RBP24.61■■□□□ 1.53
LINC00339-202ENST00000416769 URB2Q14146 1524 aaKnown RBP24.58■■□□□ 1.53
LINC00339-202ENST00000416769 OSCARQ8IYS5 282 aa24.37■■□□□ 1.49
LINC00339-202ENST00000416769 PRDM2Q13029 1718 aa24.37■■□□□ 1.49
LINC00339-202ENST00000416769 CCDC88BA6NC98 1476 aa24.37■■□□□ 1.49
LINC00339-202ENST00000416769 ZNF608Q9ULD9 1512 aaPredicted RBP24.34■■□□□ 1.49
LINC00339-202ENST00000416769 TOPBP1Q92547 1522 aa24.24■■□□□ 1.47
LINC00339-202ENST00000416769 IFT140Q96RY7 1462 aa24.21■■□□□ 1.47
LINC00339-202ENST00000416769 RIMBP3CA6NJZ7 1639 aa24.19■■□□□ 1.46
LINC00339-202ENST00000416769 RIMBP3BA6NNM3 1639 aa24.19■■□□□ 1.46
LINC00339-202ENST00000416769 RIMBP3Q9UFD9 1639 aa24.19■■□□□ 1.46
LINC00339-202ENST00000416769 EIF4G3O43432 1585 aaKnown RBP24.14■■□□□ 1.45
LINC00339-202ENST00000416769 DNMBPQ6XZF7 1577 aa24.1■■□□□ 1.45
LINC00339-202ENST00000416769 ARHGEF11O15085 1522 aa24.08■■□□□ 1.45
LINC00339-202ENST00000416769 AQRO60306 1485 aaKnown RBP eCLIP24.07■■□□□ 1.44
LINC00339-202ENST00000416769 TARBP1Q13395 1621 aaKnown RBP24.05■■□□□ 1.44
LINC00339-202ENST00000416769 CHD1O14646 1710 aa24.02■■□□□ 1.44
LINC00339-202ENST00000416769 ABCC8Q09428 1581 aa24■■□□□ 1.43
LINC00339-202ENST00000416769 POLA1P09884 1462 aaPredicted RBP23.99■■□□□ 1.43
LINC00339-202ENST00000416769 RAD54L2Q9Y4B4 1467 aa23.97■■□□□ 1.43
LINC00339-202ENST00000416769 CYB5RLQ6IPT4 315 aa23.9■■□□□ 1.42
LINC00339-202ENST00000416769 FBLN2P98095 1184 aa23.89■■□□□ 1.41
LINC00339-202ENST00000416769 TDRD9Q8NDG6 1382 aaKnown RBP23.88■■□□□ 1.41
LINC00339-202ENST00000416769 ARAP1Q96P48 1450 aa23.87■■□□□ 1.41
LINC00339-202ENST00000416769 SOGA1O94964 1423 aa23.83■■□□□ 1.4
LINC00339-202ENST00000416769 FGD5Q6ZNL6 1462 aa23.82■■□□□ 1.4
LINC00339-202ENST00000416769 CUX1P39880 1505 aa23.8■■□□□ 1.4
LINC00339-202ENST00000416769 AEBP2Q6ZN18 517 aaPredicted RBP23.8■■□□□ 1.4
LINC00339-202ENST00000416769 SNAPC4Q5SXM2 1469 aa23.8■■□□□ 1.4
LINC00339-202ENST00000416769 CLASP1Q7Z460 1538 aa23.7■■□□□ 1.38
LINC00339-202ENST00000416769 TRHP20396 242 aaPredicted RBP23.66■■□□□ 1.38
LINC00339-202ENST00000416769 WDR97A6NE52 1622 aa23.66■■□□□ 1.38
LINC00339-202ENST00000416769 GRIN2BQ13224 1484 aa23.62■■□□□ 1.37
LINC00339-202ENST00000416769 CHMP7Q8WUX9 453 aaPredicted RBP23.62■■□□□ 1.37
LINC00339-202ENST00000416769 MAGI1Q96QZ7 1491 aaPredicted RBP23.62■■□□□ 1.37
LINC00339-202ENST00000416769 SYNJ1O43426 1573 aa23.59■■□□□ 1.37
LINC00339-202ENST00000416769 PBRM1Q86U86 1689 aa23.58■■□□□ 1.37
LINC00339-202ENST00000416769 SYNJ2O15056 1496 aa23.57■■□□□ 1.36
LINC00339-202ENST00000416769 GAPVD1Q14C86 1478 aa23.54■■□□□ 1.36
LINC00339-202ENST00000416769 SUPT5HO00267 1087 aaKnown RBP23.51■■□□□ 1.35
LINC00339-202ENST00000416769 ABCA5Q8WWZ7 1642 aa23.51■■□□□ 1.35
LINC00339-202ENST00000416769 ABCA10Q8WWZ4 1543 aa23.48■■□□□ 1.35
LINC00339-202ENST00000416769 ERCC6L2Q5T890 1561 aa23.44■■□□□ 1.34
LINC00339-202ENST00000416769 GRIN2AQ12879 1464 aa23.36■■□□□ 1.33
LINC00339-202ENST00000416769 ADAMTS12P58397 1594 aa23.35■■□□□ 1.33
LINC00339-202ENST00000416769 CEP170Q5SW79 1584 aa23.35■■□□□ 1.33
LINC00339-202ENST00000416769 WRNQ14191 1432 aaPredicted RBP eCLIP23.31■■□□□ 1.32
LINC00339-202ENST00000416769 BIVM-ERCC5R4GMW8 1640 aa23.3■■□□□ 1.32
LINC00339-202ENST00000416769 TOP2BQ02880 1626 aa23.3■■□□□ 1.32
LINC00339-202ENST00000416769 NUP160Q12769 1436 aa23.28■■□□□ 1.32
LINC00339-202ENST00000416769 SHROOM2Q13796 1616 aa23.2■■□□□ 1.3
LINC00339-202ENST00000416769 FHAD1B1AJZ9 1412 aa23.2■■□□□ 1.3
LINC00339-202ENST00000416769 ERICH3Q5RHP9 1530 aa23.14■■□□□ 1.3
LINC00339-202ENST00000416769 PRG4Q92954 1404 aaPredicted RBP23.08■■□□□ 1.29
LINC00339-202ENST00000416769 KIF13AQ9H1H9 1805 aa23.04■■□□□ 1.28
LINC00339-202ENST00000416769 RUSC2Q8N2Y8 1516 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms