RNA–Protein interactions for RNA: ENST00000449372.6

SYNGAP1-204, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 3,930 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-204ENST00000449372 NISCHQ9Y2I1 1504 aa28.27■■■□□ 2.12
SYNGAP1-204ENST00000449372 CCDC180Q9P1Z9 1646 aa24.47■■□□□ 1.51
SYNGAP1-204ENST00000449372 ZCCHC6Q5VYS8 1495 aaKnown RBP23.87■■□□□ 1.41
SYNGAP1-204ENST00000449372 DCAF1Q9Y4B6 1507 aa23.41■■□□□ 1.34
SYNGAP1-204ENST00000449372 SHROOM4Q9ULL8 1493 aa23.23■■□□□ 1.31
SYNGAP1-204ENST00000449372 MYO15BQ96JP2 1530 aa22.96■■□□□ 1.27
SYNGAP1-204ENST00000449372 DCAF8L2P0C7V8 631 aa22.9■■□□□ 1.26
SYNGAP1-204ENST00000449372 PELP1Q8IZL8 1130 aaKnown RBP22.84■■□□□ 1.25
SYNGAP1-204ENST00000449372 ABCC9O60706 1549 aa22.62■■□□□ 1.21
SYNGAP1-204ENST00000449372 NACADO15069 1562 aa22.62■■□□□ 1.21
SYNGAP1-204ENST00000449372 HRCP23327 699 aa22.61■■□□□ 1.21
SYNGAP1-204ENST00000449372 SCRIBQ14160 1630 aa22.51■■□□□ 1.19
SYNGAP1-204ENST00000449372 SUPT5HO00267 1087 aaKnown RBP22.51■■□□□ 1.19
SYNGAP1-204ENST00000449372 RB1CC1Q8TDY2 1594 aa22.29■■□□□ 1.16
SYNGAP1-204ENST00000449372 MYT1Q01538 1121 aa22.16■■□□□ 1.14
SYNGAP1-204ENST00000449372 PPARGC1BQ86YN6 1023 aaKnown RBP22.11■■□□□ 1.13
SYNGAP1-204ENST00000449372 RSF1Q96T23 1441 aaPredicted RBP22.1■■□□□ 1.13
SYNGAP1-204ENST00000449372 UNC13AQ9UPW8 1703 aa22.08■■□□□ 1.13
SYNGAP1-204ENST00000449372 CECR2Q9BXF3 1484 aa21.96■■□□□ 1.11
SYNGAP1-204ENST00000449372 CHIC1Q5VXU3 224 aa21.9■■□□□ 1.1
SYNGAP1-204ENST00000449372 MROH2BQ7Z745 1585 aa21.88■■□□□ 1.09
SYNGAP1-204ENST00000449372 PCGF6Q9BYE7 350 aa21.86■■□□□ 1.09
SYNGAP1-204ENST00000449372 BICRAQ9NZM4 1560 aa21.78■■□□□ 1.08
SYNGAP1-204ENST00000449372 WIZO95785 1651 aa21.75■■□□□ 1.07
SYNGAP1-204ENST00000449372 BAZ1AQ9NRL2 1556 aaPredicted RBP21.74■■□□□ 1.07
SYNGAP1-204ENST00000449372 SCAF1Q9H7N4 1312 aaKnown RBP21.74■■□□□ 1.07
SYNGAP1-204ENST00000449372 SMARCA4P51532 1647 aa21.65■■□□□ 1.06
SYNGAP1-204ENST00000449372 TOP2AP11388 1531 aaKnown RBP21.48■■□□□ 1.03
SYNGAP1-204ENST00000449372 EIF4G1Q04637 1599 aaKnown RBP21.47■■□□□ 1.03
SYNGAP1-204ENST00000449372 PEG3Q9GZU2 1588 aa21.43■■□□□ 1.02
SYNGAP1-204ENST00000449372 PABPN1Q86U42 306 aaKnown RBP eCLIP21.38■■□□□ 1.01
SYNGAP1-204ENST00000449372 SMARCA2P51531 1590 aa21.34■■□□□ 1.01
SYNGAP1-204ENST00000449372 CCDC88BA6NC98 1476 aa21.27■■□□□ 1
SYNGAP1-204ENST00000449372 ATAD2BQ9ULI0 1458 aa21.15■□□□□ 0.98
SYNGAP1-204ENST00000449372 TRIM41Q8WV44 630 aa21.12■□□□□ 0.97
SYNGAP1-204ENST00000449372 LOC105371045A0A1W2PR82 267 aa21.07■□□□□ 0.96
SYNGAP1-204ENST00000449372 ZEB1P37275 1124 aaPredicted RBP21.05■□□□□ 0.96
SYNGAP1-204ENST00000449372 ACIN1Q9UKV3 1341 aaKnown RBP21.03■□□□□ 0.96
SYNGAP1-204ENST00000449372 ABCC8Q09428 1581 aa20.98■□□□□ 0.95
SYNGAP1-204ENST00000449372 BAZ1BQ9UIG0 1483 aaKnown RBP20.98■□□□□ 0.95
SYNGAP1-204ENST00000449372 TRIM26Q12899 539 aaPredicted RBP20.98■□□□□ 0.95
SYNGAP1-204ENST00000449372 TTBK1Q5TCY1 1321 aaPredicted RBP20.96■□□□□ 0.95
SYNGAP1-204ENST00000449372 NEUROD1Q13562 356 aa20.93■□□□□ 0.94
SYNGAP1-204ENST00000449372 HMGXB3Q12766 1538 aa20.92■□□□□ 0.94
SYNGAP1-204ENST00000449372 GTF3C3Q9Y5Q9 886 aa20.91■□□□□ 0.94
SYNGAP1-204ENST00000449372 NCAPD3P42695 1498 aa20.89■□□□□ 0.93
SYNGAP1-204ENST00000449372 FAM9AQ8IZU1 332 aaPredicted RBP20.73■□□□□ 0.91
SYNGAP1-204ENST00000449372 SYNJ1O43426 1573 aa20.73■□□□□ 0.91
SYNGAP1-204ENST00000449372 CENPBP07199 599 aaPredicted RBP20.72■□□□□ 0.91
SYNGAP1-204ENST00000449372 WRNQ14191 1432 aaPredicted RBP eCLIP20.7■□□□□ 0.91e-7■■■■■ 66.8
SYNGAP1-204ENST00000449372 SOGA1O94964 1423 aa20.66■□□□□ 0.9
SYNGAP1-204ENST00000449372 EEA1Q15075 1411 aa20.61■□□□□ 0.89
SYNGAP1-204ENST00000449372 RUSC2Q8N2Y8 1516 aa20.61■□□□□ 0.89
SYNGAP1-204ENST00000449372 BCL11AQ9H165 835 aa20.6■□□□□ 0.89
SYNGAP1-204ENST00000449372 BIVM-ERCC5R4GMW8 1640 aa20.59■□□□□ 0.89
SYNGAP1-204ENST00000449372 TOP2BQ02880 1626 aa20.59■□□□□ 0.89
SYNGAP1-204ENST00000449372 PRDM2Q13029 1718 aa20.57■□□□□ 0.88
SYNGAP1-204ENST00000449372 CC2D2AQ9P2K1 1620 aa20.57■□□□□ 0.88
SYNGAP1-204ENST00000449372 CFTRP13569 1480 aa20.56■□□□□ 0.88
SYNGAP1-204ENST00000449372 KIF21BO75037 1637 aa20.44■□□□□ 0.86
SYNGAP1-204ENST00000449372 CSRNP3Q8WYN3 585 aa20.43■□□□□ 0.86
SYNGAP1-204ENST00000449372 CUX1P39880 1505 aa20.43■□□□□ 0.86
SYNGAP1-204ENST00000449372 TNIKQ9UKE5 1360 aa20.41■□□□□ 0.86
SYNGAP1-204ENST00000449372 EHMT2Q96KQ7 1210 aa20.4■□□□□ 0.86
SYNGAP1-204ENST00000449372 GOLGA3Q08378 1498 aa20.36■□□□□ 0.85
SYNGAP1-204ENST00000449372 DIEXFQ68CQ4 756 aaKnown RBP20.34■□□□□ 0.85
SYNGAP1-204ENST00000449372 CEP162Q5TB80 1403 aa20.33■□□□□ 0.85
SYNGAP1-204ENST00000449372 CADPSQ9ULU8 1353 aa20.33■□□□□ 0.85
SYNGAP1-204ENST00000449372 CEP164Q9UPV0 1460 aa20.32■□□□□ 0.84
SYNGAP1-204ENST00000449372 PRKCSHP14314 528 aaPredicted RBP20.28■□□□□ 0.84
SYNGAP1-204ENST00000449372 RAPGEF2Q9Y4G8 1499 aa20.21■□□□□ 0.83
SYNGAP1-204ENST00000449372 PRXQ9BXM0 1461 aa20.21■□□□□ 0.83
SYNGAP1-204ENST00000449372 ANP32EQ9BTT0 268 aa20.2■□□□□ 0.82
SYNGAP1-204ENST00000449372 ERICH3Q5RHP9 1530 aa20.2■□□□□ 0.82
SYNGAP1-204ENST00000449372 FANCD2Q9BXW9 1451 aa20.12■□□□□ 0.81
SYNGAP1-204ENST00000449372 YTHDC1Q96MU7 727 aaKnown RBP20.1■□□□□ 0.81
SYNGAP1-204ENST00000449372 UBTFP17480 764 aaKnown RBP20.1■□□□□ 0.81
SYNGAP1-204ENST00000449372 LAMC3Q9Y6N6 1575 aa20.1■□□□□ 0.81
SYNGAP1-204ENST00000449372 KIF27Q86VH2 1401 aa20.1■□□□□ 0.81
SYNGAP1-204ENST00000449372 NESP48681 1621 aa20.08■□□□□ 0.81
SYNGAP1-204ENST00000449372 FGD5Q6ZNL6 1462 aa20.07■□□□□ 0.8
SYNGAP1-204ENST00000449372 ERICH6Q7L0X2 663 aa20.07■□□□□ 0.8
SYNGAP1-204ENST00000449372 DNMBPQ6XZF7 1577 aa20.06■□□□□ 0.8
SYNGAP1-204ENST00000449372 CCER1Q8TC90 406 aaPredicted RBP20.04■□□□□ 0.8
SYNGAP1-204ENST00000449372 CLIP1P30622 1438 aa20.03■□□□□ 0.8
SYNGAP1-204ENST00000449372 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.02■□□□□ 0.8
SYNGAP1-204ENST00000449372 TOPBP1Q92547 1522 aa19.99■□□□□ 0.79
SYNGAP1-204ENST00000449372 CUX2O14529 1486 aa19.97■□□□□ 0.79
SYNGAP1-204ENST00000449372 IGF1RP08069 1367 aa19.96■□□□□ 0.79
SYNGAP1-204ENST00000449372 VPS8Q8N3P4 1428 aa19.96■□□□□ 0.79
SYNGAP1-204ENST00000449372 DNAJC5BQ9UF47 199 aa19.96■□□□□ 0.79
SYNGAP1-204ENST00000449372 WDR97A6NE52 1622 aa19.95■□□□□ 0.78
SYNGAP1-204ENST00000449372 POLA1P09884 1462 aaPredicted RBP19.93■□□□□ 0.78
SYNGAP1-204ENST00000449372 ABCA10Q8WWZ4 1543 aa19.93■□□□□ 0.78
SYNGAP1-204ENST00000449372 URB2Q14146 1524 aaKnown RBP19.92■□□□□ 0.78
SYNGAP1-204ENST00000449372 ARAP1Q96P48 1450 aa19.91■□□□□ 0.78
SYNGAP1-204ENST00000449372 KIF21AQ7Z4S6 1674 aa19.9■□□□□ 0.78
SYNGAP1-204ENST00000449372 RAD54L2Q9Y4B4 1467 aa19.86■□□□□ 0.77
SYNGAP1-204ENST00000449372 PDS5BQ9NTI5 1447 aa19.82■□□□□ 0.76
SYNGAP1-204ENST00000449372 TSHZ2Q9NRE2 1034 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms