RNA–Protein interactions for RNA: ENST00000635675.2

LINC00339-210, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,404 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-210ENST00000635675 NISCHQ9Y2I1 1504 aa23.54■■□□□ 1.36
LINC00339-210ENST00000635675 CCDC180Q9P1Z9 1646 aa20.87■□□□□ 0.93
LINC00339-210ENST00000635675 ABCC9O60706 1549 aa20.36■□□□□ 0.85
LINC00339-210ENST00000635675 DCAF8L2P0C7V8 631 aa19.64■□□□□ 0.73
LINC00339-210ENST00000635675 NACADO15069 1562 aa19.62■□□□□ 0.73
LINC00339-210ENST00000635675 ZCCHC6Q5VYS8 1495 aaKnown RBP19.61■□□□□ 0.73
LINC00339-210ENST00000635675 RB1CC1Q8TDY2 1594 aa19.61■□□□□ 0.73
LINC00339-210ENST00000635675 MYO15BQ96JP2 1530 aa19.55■□□□□ 0.72
LINC00339-210ENST00000635675 DCAF1Q9Y4B6 1507 aa19.49■□□□□ 0.71
LINC00339-210ENST00000635675 UNC13AQ9UPW8 1703 aa19.17■□□□□ 0.66
LINC00339-210ENST00000635675 PABPN1Q86U42 306 aaKnown RBP eCLIP19.07■□□□□ 0.64
LINC00339-210ENST00000635675 SCRIBQ14160 1630 aa19.05■□□□□ 0.64
LINC00339-210ENST00000635675 BICRAQ9NZM4 1560 aa19.04■□□□□ 0.64
LINC00339-210ENST00000635675 SHROOM4Q9ULL8 1493 aa18.83■□□□□ 0.61
LINC00339-210ENST00000635675 DNAJC5BQ9UF47 199 aa18.68■□□□□ 0.58
LINC00339-210ENST00000635675 EIF4G1Q04637 1599 aaKnown RBP18.51■□□□□ 0.55
LINC00339-210ENST00000635675 CC2D2AQ9P2K1 1620 aa18.42■□□□□ 0.54
LINC00339-210ENST00000635675 CECR2Q9BXF3 1484 aa18.35■□□□□ 0.53
LINC00339-210ENST00000635675 SMARCA4P51532 1647 aa18.24■□□□□ 0.51
LINC00339-210ENST00000635675 BAZ1AQ9NRL2 1556 aaPredicted RBP18.22■□□□□ 0.51
LINC00339-210ENST00000635675 MROH2BQ7Z745 1585 aa18.14■□□□□ 0.5
LINC00339-210ENST00000635675 ATAD2BQ9ULI0 1458 aa18.14■□□□□ 0.49
LINC00339-210ENST00000635675 NCAPD3P42695 1498 aa18.13■□□□□ 0.49
LINC00339-210ENST00000635675 SMARCA2P51531 1590 aa18.1■□□□□ 0.49
LINC00339-210ENST00000635675 PEG3Q9GZU2 1588 aa18.07■□□□□ 0.48
LINC00339-210ENST00000635675 HMGXB3Q12766 1538 aa18.01■□□□□ 0.47
LINC00339-210ENST00000635675 RSF1Q96T23 1441 aaPredicted RBP17.98■□□□□ 0.47
LINC00339-210ENST00000635675 BAZ1BQ9UIG0 1483 aaKnown RBP17.97■□□□□ 0.47
LINC00339-210ENST00000635675 WIZO95785 1651 aa17.94■□□□□ 0.46
LINC00339-210ENST00000635675 TOP2AP11388 1531 aaKnown RBP17.75■□□□□ 0.43
LINC00339-210ENST00000635675 NESP48681 1621 aa17.66■□□□□ 0.42
LINC00339-210ENST00000635675 LAMC3Q9Y6N6 1575 aa17.61■□□□□ 0.41
LINC00339-210ENST00000635675 CADPSQ9ULU8 1353 aa17.6■□□□□ 0.41
LINC00339-210ENST00000635675 CCDC88BA6NC98 1476 aa17.56■□□□□ 0.4
LINC00339-210ENST00000635675 SUPT5HO00267 1087 aaKnown RBP17.56■□□□□ 0.4
LINC00339-210ENST00000635675 ERCC6Q03468 1493 aa17.53■□□□□ 0.4
LINC00339-210ENST00000635675 CFTRP13569 1480 aa17.51■□□□□ 0.39
LINC00339-210ENST00000635675 PDS5BQ9NTI5 1447 aa17.49■□□□□ 0.39
LINC00339-210ENST00000635675 KIF21AQ7Z4S6 1674 aa17.42■□□□□ 0.38
LINC00339-210ENST00000635675 FANCD2Q9BXW9 1451 aa17.37■□□□□ 0.37
LINC00339-210ENST00000635675 THOC2Q8NI27 1593 aaKnown RBP17.35■□□□□ 0.37
LINC00339-210ENST00000635675 PRDM2Q13029 1718 aa17.34■□□□□ 0.37
LINC00339-210ENST00000635675 CEP164Q9UPV0 1460 aa17.34■□□□□ 0.37
LINC00339-210ENST00000635675 CUX2O14529 1486 aa17.33■□□□□ 0.37
LINC00339-210ENST00000635675 MRC2Q9UBG0 1479 aa17.3■□□□□ 0.36
LINC00339-210ENST00000635675 WDR62O43379 1518 aa17.25■□□□□ 0.35
LINC00339-210ENST00000635675 AEBP2Q6ZN18 517 aaPredicted RBP17.22■□□□□ 0.35
LINC00339-210ENST00000635675 URB2Q14146 1524 aaKnown RBP17.21■□□□□ 0.34
LINC00339-210ENST00000635675 ABCC8Q09428 1581 aa17.12■□□□□ 0.33
LINC00339-210ENST00000635675 TOPBP1Q92547 1522 aa17.11■□□□□ 0.33
LINC00339-210ENST00000635675 DNMBPQ6XZF7 1577 aa17.09■□□□□ 0.33
LINC00339-210ENST00000635675 CUX1P39880 1505 aa17.01■□□□□ 0.31
LINC00339-210ENST00000635675 IFT140Q96RY7 1462 aa16.98■□□□□ 0.31
LINC00339-210ENST00000635675 POLA1P09884 1462 aaPredicted RBP16.97■□□□□ 0.31
LINC00339-210ENST00000635675 FGD5Q6ZNL6 1462 aa16.94■□□□□ 0.3
LINC00339-210ENST00000635675 TARBP1Q13395 1621 aaKnown RBP16.93■□□□□ 0.3
LINC00339-210ENST00000635675 WRNQ14191 1432 aaPredicted RBP eCLIP16.92■□□□□ 0.3
LINC00339-210ENST00000635675 SOGA1O94964 1423 aa16.91■□□□□ 0.3
LINC00339-210ENST00000635675 ZNF608Q9ULD9 1512 aaPredicted RBP16.91■□□□□ 0.3
LINC00339-210ENST00000635675 RAD54L2Q9Y4B4 1467 aa16.9■□□□□ 0.3
LINC00339-210ENST00000635675 TOP2BQ02880 1626 aa16.88■□□□□ 0.29
LINC00339-210ENST00000635675 SYNJ1O43426 1573 aa16.88■□□□□ 0.29
LINC00339-210ENST00000635675 BIVM-ERCC5R4GMW8 1640 aa16.87■□□□□ 0.29
LINC00339-210ENST00000635675 AQRO60306 1485 aaKnown RBP eCLIP16.83■□□□□ 0.28
LINC00339-210ENST00000635675 EIF4G3O43432 1585 aaKnown RBP16.82■□□□□ 0.28
LINC00339-210ENST00000635675 TDRD9Q8NDG6 1382 aaKnown RBP16.81■□□□□ 0.28
LINC00339-210ENST00000635675 ABCA10Q8WWZ4 1543 aa16.79■□□□□ 0.28
LINC00339-210ENST00000635675 WDR97A6NE52 1622 aa16.78■□□□□ 0.28
LINC00339-210ENST00000635675 DNAJC5Q9H3Z4 198 aa16.76■□□□□ 0.27
LINC00339-210ENST00000635675 GAPVD1Q14C86 1478 aa16.71■□□□□ 0.27
LINC00339-210ENST00000635675 ABCA5Q8WWZ7 1642 aa16.7■□□□□ 0.26
LINC00339-210ENST00000635675 GRIN2BQ13224 1484 aa16.7■□□□□ 0.26
LINC00339-210ENST00000635675 OSCARQ8IYS5 282 aa16.66■□□□□ 0.26
LINC00339-210ENST00000635675 SNAPC4Q5SXM2 1469 aa16.65■□□□□ 0.26
LINC00339-210ENST00000635675 MAGI1Q96QZ7 1491 aaPredicted RBP16.64■□□□□ 0.25
LINC00339-210ENST00000635675 PBRM1Q86U86 1689 aa16.64■□□□□ 0.25
LINC00339-210ENST00000635675 FBLN2P98095 1184 aa16.6■□□□□ 0.25
LINC00339-210ENST00000635675 CHD1O14646 1710 aa16.59■□□□□ 0.25
LINC00339-210ENST00000635675 TRIM41Q8WV44 630 aa16.59■□□□□ 0.25
LINC00339-210ENST00000635675 ERICH3Q5RHP9 1530 aa16.58■□□□□ 0.24
LINC00339-210ENST00000635675 SYNJ2O15056 1496 aa16.57■□□□□ 0.24
LINC00339-210ENST00000635675 KIF27Q86VH2 1401 aa16.57■□□□□ 0.24
LINC00339-210ENST00000635675 CHMP7Q8WUX9 453 aaPredicted RBP16.57■□□□□ 0.24
LINC00339-210ENST00000635675 FHAD1B1AJZ9 1412 aa16.52■□□□□ 0.24
LINC00339-210ENST00000635675 ADAMTS12P58397 1594 aa16.52■□□□□ 0.24
LINC00339-210ENST00000635675 IGF1RP08069 1367 aa16.52■□□□□ 0.23
LINC00339-210ENST00000635675 GRIN2AQ12879 1464 aa16.47■□□□□ 0.23
LINC00339-210ENST00000635675 RUSC2Q8N2Y8 1516 aa16.46■□□□□ 0.23
LINC00339-210ENST00000635675 CHIC1Q5VXU3 224 aa16.45■□□□□ 0.22
LINC00339-210ENST00000635675 CUL7Q14999 1698 aa16.43■□□□□ 0.22
LINC00339-210ENST00000635675 CLASP1Q7Z460 1538 aa16.43■□□□□ 0.22
LINC00339-210ENST00000635675 NUP160Q12769 1436 aa16.41■□□□□ 0.22
LINC00339-210ENST00000635675 CARMIL1Q5VZK9 1371 aa16.41■□□□□ 0.22
LINC00339-210ENST00000635675 CEP170Q5SW79 1584 aa16.39■□□□□ 0.21
LINC00339-210ENST00000635675 ARHGEF11O15085 1522 aa16.35■□□□□ 0.21
LINC00339-210ENST00000635675 RIMBP3CA6NJZ7 1639 aa16.34■□□□□ 0.21
LINC00339-210ENST00000635675 RIMBP3BA6NNM3 1639 aa16.34■□□□□ 0.21
LINC00339-210ENST00000635675 RIMBP3Q9UFD9 1639 aa16.34■□□□□ 0.21
LINC00339-210ENST00000635675 RAPGEF2Q9Y4G8 1499 aa16.3■□□□□ 0.2
LINC00339-210ENST00000635675 EEA1Q15075 1411 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 147.7 ms