RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 NISCHQ9Y2I1 1504 aa29.02■■■□□ 2.24
LINC00339-201ENST00000404210 CCDC180Q9P1Z9 1646 aa25.58■■□□□ 1.69
LINC00339-201ENST00000404210 ABCC9O60706 1549 aa24.61■■□□□ 1.53
LINC00339-201ENST00000404210 ZCCHC6Q5VYS8 1495 aaKnown RBP24.24■■□□□ 1.47
LINC00339-201ENST00000404210 DCAF8L2P0C7V8 631 aa24.12■■□□□ 1.45
LINC00339-201ENST00000404210 DCAF1Q9Y4B6 1507 aa24.05■■□□□ 1.44
LINC00339-201ENST00000404210 MYO15BQ96JP2 1530 aa24■■□□□ 1.43
LINC00339-201ENST00000404210 NACADO15069 1562 aa23.98■■□□□ 1.43
LINC00339-201ENST00000404210 RB1CC1Q8TDY2 1594 aa23.88■■□□□ 1.41
LINC00339-201ENST00000404210 AEBP2Q6ZN18 517 aaPredicted RBP23.8■■□□□ 1.4
LINC00339-201ENST00000404210 SCRIBQ14160 1630 aa23.34■■□□□ 1.33
LINC00339-201ENST00000404210 UNC13AQ9UPW8 1703 aa23.33■■□□□ 1.32
LINC00339-201ENST00000404210 SHROOM4Q9ULL8 1493 aa23.17■■□□□ 1.3
LINC00339-201ENST00000404210 BICRAQ9NZM4 1560 aa23.13■■□□□ 1.29
LINC00339-201ENST00000404210 PABPN1Q86U42 306 aaKnown RBP eCLIP23.11■■□□□ 1.29
LINC00339-201ENST00000404210 CECR2Q9BXF3 1484 aa22.55■■□□□ 1.2
LINC00339-201ENST00000404210 CHIC1Q5VXU3 224 aa22.52■■□□□ 1.2
LINC00339-201ENST00000404210 EIF4G1Q04637 1599 aaKnown RBP22.48■■□□□ 1.19
LINC00339-201ENST00000404210 BAZ1AQ9NRL2 1556 aaPredicted RBP22.46■■□□□ 1.19
LINC00339-201ENST00000404210 SMARCA4P51532 1647 aa22.4■■□□□ 1.18
LINC00339-201ENST00000404210 MROH2BQ7Z745 1585 aa22.36■■□□□ 1.17
LINC00339-201ENST00000404210 RSF1Q96T23 1441 aaPredicted RBP22.29■■□□□ 1.16
LINC00339-201ENST00000404210 CC2D2AQ9P2K1 1620 aa22.28■■□□□ 1.16
LINC00339-201ENST00000404210 DNAJC5BQ9UF47 199 aa22.23■■□□□ 1.15
LINC00339-201ENST00000404210 ATAD2BQ9ULI0 1458 aa22.2■■□□□ 1.14
LINC00339-201ENST00000404210 PEG3Q9GZU2 1588 aa22.2■■□□□ 1.14
LINC00339-201ENST00000404210 SMARCA2P51531 1590 aa22.17■■□□□ 1.14
LINC00339-201ENST00000404210 NCAPD3P42695 1498 aa22.14■■□□□ 1.13
LINC00339-201ENST00000404210 WIZO95785 1651 aa22.14■■□□□ 1.13
LINC00339-201ENST00000404210 SUPT5HO00267 1087 aaKnown RBP22.07■■□□□ 1.12
LINC00339-201ENST00000404210 HMGXB3Q12766 1538 aa22.02■■□□□ 1.12
LINC00339-201ENST00000404210 BAZ1BQ9UIG0 1483 aaKnown RBP22.02■■□□□ 1.12
LINC00339-201ENST00000404210 TOP2AP11388 1531 aaKnown RBP21.92■■□□□ 1.1
LINC00339-201ENST00000404210 CCDC88BA6NC98 1476 aa21.7■■□□□ 1.06
LINC00339-201ENST00000404210 CADPSQ9ULU8 1353 aa21.52■■□□□ 1.04
LINC00339-201ENST00000404210 CFTRP13569 1480 aa21.46■■□□□ 1.03
LINC00339-201ENST00000404210 LAMC3Q9Y6N6 1575 aa21.45■■□□□ 1.02
LINC00339-201ENST00000404210 NESP48681 1621 aa21.42■■□□□ 1.02
LINC00339-201ENST00000404210 PDS5BQ9NTI5 1447 aa21.32■■□□□ 1
LINC00339-201ENST00000404210 PRDM2Q13029 1718 aa21.31■■□□□ 1
LINC00339-201ENST00000404210 FANCD2Q9BXW9 1451 aa21.24■□□□□ 0.99
LINC00339-201ENST00000404210 ERCC6Q03468 1493 aa21.17■□□□□ 0.98
LINC00339-201ENST00000404210 KIF21AQ7Z4S6 1674 aa21.17■□□□□ 0.98
LINC00339-201ENST00000404210 CEP164Q9UPV0 1460 aa21.15■□□□□ 0.98
LINC00339-201ENST00000404210 MRC2Q9UBG0 1479 aa21.04■□□□□ 0.96
LINC00339-201ENST00000404210 ABCC8Q09428 1581 aa21.02■□□□□ 0.96
LINC00339-201ENST00000404210 WRNQ14191 1432 aaPredicted RBP eCLIP20.99■□□□□ 0.95
LINC00339-201ENST00000404210 URB2Q14146 1524 aaKnown RBP20.98■□□□□ 0.95
LINC00339-201ENST00000404210 THOC2Q8NI27 1593 aaKnown RBP20.97■□□□□ 0.95
LINC00339-201ENST00000404210 DNMBPQ6XZF7 1577 aa20.95■□□□□ 0.94
LINC00339-201ENST00000404210 WDR62O43379 1518 aa20.94■□□□□ 0.94
LINC00339-201ENST00000404210 TOPBP1Q92547 1522 aa20.94■□□□□ 0.94
LINC00339-201ENST00000404210 CUX1P39880 1505 aa20.94■□□□□ 0.94
LINC00339-201ENST00000404210 TOP2BQ02880 1626 aa20.89■□□□□ 0.93
LINC00339-201ENST00000404210 BIVM-ERCC5R4GMW8 1640 aa20.88■□□□□ 0.93
LINC00339-201ENST00000404210 SYNJ1O43426 1573 aa20.88■□□□□ 0.93
LINC00339-201ENST00000404210 TRIM41Q8WV44 630 aa20.86■□□□□ 0.93
LINC00339-201ENST00000404210 CUX2O14529 1486 aa20.81■□□□□ 0.92
LINC00339-201ENST00000404210 FGD5Q6ZNL6 1462 aa20.81■□□□□ 0.92
LINC00339-201ENST00000404210 POLA1P09884 1462 aaPredicted RBP20.79■□□□□ 0.92
LINC00339-201ENST00000404210 SOGA1O94964 1423 aa20.76■□□□□ 0.91
LINC00339-201ENST00000404210 IFT140Q96RY7 1462 aa20.71■□□□□ 0.91
LINC00339-201ENST00000404210 RAD54L2Q9Y4B4 1467 aa20.7■□□□□ 0.9
LINC00339-201ENST00000404210 TARBP1Q13395 1621 aaKnown RBP20.67■□□□□ 0.9
LINC00339-201ENST00000404210 ABCA10Q8WWZ4 1543 aa20.64■□□□□ 0.9
LINC00339-201ENST00000404210 WDR97A6NE52 1622 aa20.59■□□□□ 0.89
LINC00339-201ENST00000404210 TDRD9Q8NDG6 1382 aaKnown RBP20.57■□□□□ 0.88
LINC00339-201ENST00000404210 ZNF608Q9ULD9 1512 aaPredicted RBP20.56■□□□□ 0.88
LINC00339-201ENST00000404210 KIF27Q86VH2 1401 aa20.53■□□□□ 0.88
LINC00339-201ENST00000404210 AQRO60306 1485 aaKnown RBP eCLIP20.53■□□□□ 0.88
LINC00339-201ENST00000404210 GAPVD1Q14C86 1478 aa20.5■□□□□ 0.87
LINC00339-201ENST00000404210 SENP3Q9H4L4 574 aaPredicted RBP20.48■□□□□ 0.87
LINC00339-201ENST00000404210 ABCA5Q8WWZ7 1642 aa20.48■□□□□ 0.87
LINC00339-201ENST00000404210 RUSC2Q8N2Y8 1516 aa20.47■□□□□ 0.87
LINC00339-201ENST00000404210 EIF4G3O43432 1585 aaKnown RBP20.46■□□□□ 0.87
LINC00339-201ENST00000404210 EEA1Q15075 1411 aa20.45■□□□□ 0.86
LINC00339-201ENST00000404210 GRIN2BQ13224 1484 aa20.43■□□□□ 0.86
LINC00339-201ENST00000404210 IGF1RP08069 1367 aa20.43■□□□□ 0.86
LINC00339-201ENST00000404210 ERICH3Q5RHP9 1530 aa20.41■□□□□ 0.86
LINC00339-201ENST00000404210 CSRNP3Q8WYN3 585 aa20.4■□□□□ 0.86
LINC00339-201ENST00000404210 PBRM1Q86U86 1689 aa20.39■□□□□ 0.86
LINC00339-201ENST00000404210 FAM9AQ8IZU1 332 aaPredicted RBP20.38■□□□□ 0.85
LINC00339-201ENST00000404210 MAGI1Q96QZ7 1491 aaPredicted RBP20.32■□□□□ 0.84
LINC00339-201ENST00000404210 SNAPC4Q5SXM2 1469 aa20.31■□□□□ 0.84
LINC00339-201ENST00000404210 CARMIL1Q5VZK9 1371 aa20.31■□□□□ 0.84
LINC00339-201ENST00000404210 FHAD1B1AJZ9 1412 aa20.29■□□□□ 0.84
LINC00339-201ENST00000404210 CUL7Q14999 1698 aa20.29■□□□□ 0.84
LINC00339-201ENST00000404210 CHMP7Q8WUX9 453 aaPredicted RBP20.25■□□□□ 0.83
LINC00339-201ENST00000404210 ADAMTS12P58397 1594 aa20.25■□□□□ 0.83
LINC00339-201ENST00000404210 SYNJ2O15056 1496 aa20.24■□□□□ 0.83
LINC00339-201ENST00000404210 PRXQ9BXM0 1461 aa20.24■□□□□ 0.83
LINC00339-201ENST00000404210 RAPGEF2Q9Y4G8 1499 aa20.22■□□□□ 0.83
LINC00339-201ENST00000404210 FBLN2P98095 1184 aa20.21■□□□□ 0.83
LINC00339-201ENST00000404210 KIF21BO75037 1637 aa20.16■□□□□ 0.82
LINC00339-201ENST00000404210 GRIN2AQ12879 1464 aa20.16■□□□□ 0.82
LINC00339-201ENST00000404210 CHD1O14646 1710 aa20.14■□□□□ 0.81
LINC00339-201ENST00000404210 PHF23Q9BUL5 403 aaPredicted RBP20.13■□□□□ 0.81
LINC00339-201ENST00000404210 OSCARQ8IYS5 282 aa20.1■□□□□ 0.81
LINC00339-201ENST00000404210 GOLGA3Q08378 1498 aa20.09■□□□□ 0.81
LINC00339-201ENST00000404210 NUP160Q12769 1436 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms