RNA–Protein interactions for RNA: ENST00000428982.4

SYNGAP1-203, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5 BASIC

Gene SYNGAP1, Length 4,339 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-203ENST00000428982 NISCHQ9Y2I1 1504 aa27.94■■■□□ 2.06
SYNGAP1-203ENST00000428982 DCAF8L2P0C7V8 631 aa24.9■■□□□ 1.58
SYNGAP1-203ENST00000428982 PELP1Q8IZL8 1130 aaKnown RBP24.88■■□□□ 1.57
SYNGAP1-203ENST00000428982 MYT1Q01538 1121 aa24.44■■□□□ 1.5
SYNGAP1-203ENST00000428982 CCDC180Q9P1Z9 1646 aa23.99■■□□□ 1.43
SYNGAP1-203ENST00000428982 SHROOM4Q9ULL8 1493 aa23.94■■□□□ 1.42
SYNGAP1-203ENST00000428982 HRCP23327 699 aa23.56■■□□□ 1.36
SYNGAP1-203ENST00000428982 ABCC9O60706 1549 aa23.55■■□□□ 1.36
SYNGAP1-203ENST00000428982 SUPT5HO00267 1087 aaKnown RBP23.43■■□□□ 1.34
SYNGAP1-203ENST00000428982 ZCCHC6Q5VYS8 1495 aaKnown RBP23.33■■□□□ 1.33
SYNGAP1-203ENST00000428982 PCGF6Q9BYE7 350 aa23.03■■□□□ 1.28
SYNGAP1-203ENST00000428982 PPARGC1BQ86YN6 1023 aaKnown RBP23.02■■□□□ 1.28
SYNGAP1-203ENST00000428982 TTBK1Q5TCY1 1321 aaPredicted RBP22.99■■□□□ 1.27
SYNGAP1-203ENST00000428982 DCAF1Q9Y4B6 1507 aa22.78■■□□□ 1.24
SYNGAP1-203ENST00000428982 NACADO15069 1562 aa22.7■■□□□ 1.23
SYNGAP1-203ENST00000428982 SCAF1Q9H7N4 1312 aaKnown RBP22.69■■□□□ 1.22
SYNGAP1-203ENST00000428982 RB1CC1Q8TDY2 1594 aa22.67■■□□□ 1.22
SYNGAP1-203ENST00000428982 SCRIBQ14160 1630 aa22.65■■□□□ 1.22
SYNGAP1-203ENST00000428982 PABPN1Q86U42 306 aaKnown RBP eCLIP22.54■■□□□ 1.2
SYNGAP1-203ENST00000428982 CHIC1Q5VXU3 224 aa22.48■■□□□ 1.19
SYNGAP1-203ENST00000428982 CENPBP07199 599 aaPredicted RBP22.46■■□□□ 1.19
SYNGAP1-203ENST00000428982 MYO15BQ96JP2 1530 aa22.45■■□□□ 1.18
SYNGAP1-203ENST00000428982 ZEB1P37275 1124 aaPredicted RBP22.35■■□□□ 1.17
SYNGAP1-203ENST00000428982 GTF3C3Q9Y5Q9 886 aa22.2■■□□□ 1.15
SYNGAP1-203ENST00000428982 ERICH6Q7L0X2 663 aa22.17■■□□□ 1.14
SYNGAP1-203ENST00000428982 ACIN1Q9UKV3 1341 aaKnown RBP22.16■■□□□ 1.14
SYNGAP1-203ENST00000428982 BCL11AQ9H165 835 aa22.15■■□□□ 1.14
SYNGAP1-203ENST00000428982 TRIM26Q12899 539 aaPredicted RBP21.99■■□□□ 1.11
SYNGAP1-203ENST00000428982 TRIM41Q8WV44 630 aa21.96■■□□□ 1.11
SYNGAP1-203ENST00000428982 NEUROD1Q13562 356 aa21.89■■□□□ 1.1
SYNGAP1-203ENST00000428982 PRKCSHP14314 528 aaPredicted RBP21.85■■□□□ 1.09
SYNGAP1-203ENST00000428982 RSF1Q96T23 1441 aaPredicted RBP21.84■■□□□ 1.09
SYNGAP1-203ENST00000428982 FAM9AQ8IZU1 332 aaPredicted RBP21.79■■□□□ 1.08
SYNGAP1-203ENST00000428982 LOC105371045A0A1W2PR82 267 aa21.76■■□□□ 1.07
SYNGAP1-203ENST00000428982 CECR2Q9BXF3 1484 aa21.76■■□□□ 1.07
SYNGAP1-203ENST00000428982 BAZ1AQ9NRL2 1556 aaPredicted RBP21.76■■□□□ 1.07
SYNGAP1-203ENST00000428982 EHMT2Q96KQ7 1210 aa21.74■■□□□ 1.07
SYNGAP1-203ENST00000428982 YTHDC1Q96MU7 727 aaKnown RBP21.65■■□□□ 1.06
SYNGAP1-203ENST00000428982 MROH2BQ7Z745 1585 aa21.58■■□□□ 1.04
SYNGAP1-203ENST00000428982 ANP32EQ9BTT0 268 aa21.56■■□□□ 1.04
SYNGAP1-203ENST00000428982 DIEXFQ68CQ4 756 aaKnown RBP21.48■■□□□ 1.03
SYNGAP1-203ENST00000428982 BAZ1BQ9UIG0 1483 aaKnown RBP21.47■■□□□ 1.03
SYNGAP1-203ENST00000428982 SMARCA4P51532 1647 aa21.38■■□□□ 1.01
SYNGAP1-203ENST00000428982 SMARCA2P51531 1590 aa21.34■■□□□ 1.01
SYNGAP1-203ENST00000428982 WIZO95785 1651 aa21.34■■□□□ 1.01
SYNGAP1-203ENST00000428982 CCER1Q8TC90 406 aaPredicted RBP21.33■■□□□ 1
SYNGAP1-203ENST00000428982 UBTFP17480 764 aaKnown RBP21.29■■□□□ 1
SYNGAP1-203ENST00000428982 BICRAQ9NZM4 1560 aa21.27■■□□□ 1
SYNGAP1-203ENST00000428982 UNC13AQ9UPW8 1703 aa21.26■□□□□ 0.99
SYNGAP1-203ENST00000428982 TOP2AP11388 1531 aaKnown RBP21.23■□□□□ 0.99
SYNGAP1-203ENST00000428982 ATAD2BQ9ULI0 1458 aa21.21■□□□□ 0.99
SYNGAP1-203ENST00000428982 CSRNP3Q8WYN3 585 aa21.2■□□□□ 0.98
SYNGAP1-203ENST00000428982 APLP2Q06481 763 aa21.15■□□□□ 0.98
SYNGAP1-203ENST00000428982 CCDC88BA6NC98 1476 aa21.14■□□□□ 0.97
SYNGAP1-203ENST00000428982 RANGAP1P46060 587 aaPredicted RBP21.13■□□□□ 0.97
SYNGAP1-203ENST00000428982 EIF4G1Q04637 1599 aaKnown RBP21.1■□□□□ 0.97
SYNGAP1-203ENST00000428982 NCAPD3P42695 1498 aa20.95■□□□□ 0.94
SYNGAP1-203ENST00000428982 WRNQ14191 1432 aaPredicted RBP eCLIP20.95■□□□□ 0.94
SYNGAP1-203ENST00000428982 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.92■□□□□ 0.94
SYNGAP1-203ENST00000428982 CLSPNQ9HAW4 1339 aa20.87■□□□□ 0.93
SYNGAP1-203ENST00000428982 CC2D2AQ9P2K1 1620 aa20.78■□□□□ 0.92
SYNGAP1-203ENST00000428982 HMGXB3Q12766 1538 aa20.78■□□□□ 0.92
SYNGAP1-203ENST00000428982 ATP1B4Q9UN42 357 aaPredicted RBP20.78■□□□□ 0.92
SYNGAP1-203ENST00000428982 CADPSQ9ULU8 1353 aa20.78■□□□□ 0.92
SYNGAP1-203ENST00000428982 ABCC8Q09428 1581 aa20.75■□□□□ 0.91
SYNGAP1-203ENST00000428982 EEA1Q15075 1411 aa20.74■□□□□ 0.91
SYNGAP1-203ENST00000428982 ZNF316A6NFI3 1004 aaPredicted RBP20.74■□□□□ 0.91
SYNGAP1-203ENST00000428982 NEFLP07196 543 aa20.74■□□□□ 0.91
SYNGAP1-203ENST00000428982 TSHZ2Q9NRE2 1034 aa20.74■□□□□ 0.91
SYNGAP1-203ENST00000428982 PEG3Q9GZU2 1588 aa20.73■□□□□ 0.91
SYNGAP1-203ENST00000428982 MYT1LQ9UL68 1186 aa20.73■□□□□ 0.91
SYNGAP1-203ENST00000428982 BCANQ96GW7 911 aa20.67■□□□□ 0.9
SYNGAP1-203ENST00000428982 PDS5BQ9NTI5 1447 aa20.67■□□□□ 0.9
SYNGAP1-203ENST00000428982 SUPT16HQ9Y5B9 1047 aaKnown RBP20.64■□□□□ 0.89
SYNGAP1-203ENST00000428982 ANO8Q9HCE9 1232 aaPredicted RBP20.61■□□□□ 0.89
SYNGAP1-203ENST00000428982 ERCC6Q03468 1493 aa20.61■□□□□ 0.89
SYNGAP1-203ENST00000428982 EIF5BO60841 1220 aaKnown RBP20.6■□□□□ 0.89
SYNGAP1-203ENST00000428982 KIF27Q86VH2 1401 aa20.58■□□□□ 0.89
SYNGAP1-203ENST00000428982 TNIKQ9UKE5 1360 aa20.58■□□□□ 0.88
SYNGAP1-203ENST00000428982 MIER1Q8N108 512 aa20.55■□□□□ 0.88
SYNGAP1-203ENST00000428982 CEP162Q5TB80 1403 aa20.53■□□□□ 0.88
SYNGAP1-203ENST00000428982 SLC24A1O60721 1099 aa20.52■□□□□ 0.88
SYNGAP1-203ENST00000428982 FBLN2P98095 1184 aa20.52■□□□□ 0.88
SYNGAP1-203ENST00000428982 SOGA1O94964 1423 aa20.52■□□□□ 0.87
SYNGAP1-203ENST00000428982 FANCD2Q9BXW9 1451 aa20.51■□□□□ 0.87
SYNGAP1-203ENST00000428982 CFTRP13569 1480 aa20.5■□□□□ 0.87
SYNGAP1-203ENST00000428982 CEP164Q9UPV0 1460 aa20.49■□□□□ 0.87
SYNGAP1-203ENST00000428982 GOLGA3Q08378 1498 aa20.48■□□□□ 0.87
SYNGAP1-203ENST00000428982 HNRNPUL2Q1KMD3 747 aaKnown RBP20.47■□□□□ 0.87
SYNGAP1-203ENST00000428982 RTL5Q5HYW3 569 aaPredicted RBP20.46■□□□□ 0.87
SYNGAP1-203ENST00000428982 CUX2O14529 1486 aa20.44■□□□□ 0.86
SYNGAP1-203ENST00000428982 DEKP35659 375 aaKnown RBP20.43■□□□□ 0.86
SYNGAP1-203ENST00000428982 CCDC136Q96JN2 1154 aa20.42■□□□□ 0.86
SYNGAP1-203ENST00000428982 RBM19Q9Y4C8 960 aaKnown RBP20.36■□□□□ 0.85
SYNGAP1-203ENST00000428982 NESP48681 1621 aa20.33■□□□□ 0.85
SYNGAP1-203ENST00000428982 P3H3Q8IVL6 736 aa20.33■□□□□ 0.85
SYNGAP1-203ENST00000428982 DNAJC5BQ9UF47 199 aa20.33■□□□□ 0.84
SYNGAP1-203ENST00000428982 FKBP8Q14318 412 aa20.32■□□□□ 0.84
SYNGAP1-203ENST00000428982 ERICH6BQ5W0A0 696 aa20.31■□□□□ 0.84
SYNGAP1-203ENST00000428982 CLIP1P30622 1438 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms