RNA–Protein interactions for RNA: ENST00000479510.2

SYNGAP1-206, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 2

Gene SYNGAP1, Length 2,073 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-206ENST00000479510 NISCHQ9Y2I1 1504 aa51.33■■■■■ 5.81
SYNGAP1-206ENST00000479510 CCDC180Q9P1Z9 1646 aa43.87■■■■■ 4.61
SYNGAP1-206ENST00000479510 ZCCHC6Q5VYS8 1495 aaKnown RBP43.47■■■■■ 4.55
SYNGAP1-206ENST00000479510 SHROOM4Q9ULL8 1493 aa43.16■■■■■ 4.5
SYNGAP1-206ENST00000479510 DCAF1Q9Y4B6 1507 aa42.43■■■■■ 4.38
SYNGAP1-206ENST00000479510 SUPT5HO00267 1087 aaKnown RBP42.39■■■■■ 4.38
SYNGAP1-206ENST00000479510 DCAF8L2P0C7V8 631 aa41.91■■■■■ 4.3
SYNGAP1-206ENST00000479510 CHIC1Q5VXU3 224 aa41.49■■■■■ 4.23
SYNGAP1-206ENST00000479510 MYO15BQ96JP2 1530 aa41.27■■■■■ 4.2
SYNGAP1-206ENST00000479510 ABCC9O60706 1549 aa41.02■■■■■ 4.16
SYNGAP1-206ENST00000479510 SCRIBQ14160 1630 aa40.67■■■■■ 4.1
SYNGAP1-206ENST00000479510 RSF1Q96T23 1441 aaPredicted RBP40.53■■■■■ 4.08
SYNGAP1-206ENST00000479510 NACADO15069 1562 aa40.51■■■■■ 4.08
SYNGAP1-206ENST00000479510 HRCP23327 699 aa40.27■■■■■ 4.04
SYNGAP1-206ENST00000479510 RB1CC1Q8TDY2 1594 aa40.22■■■■■ 4.03
SYNGAP1-206ENST00000479510 PCGF6Q9BYE7 350 aa40■■■■□ 3.99
SYNGAP1-206ENST00000479510 LOC105371045A0A1W2PR82 267 aa39.98■■■■□ 3.99
SYNGAP1-206ENST00000479510 CECR2Q9BXF3 1484 aa39.78■■■■□ 3.96
SYNGAP1-206ENST00000479510 MROH2BQ7Z745 1585 aa39.74■■■■□ 3.95
SYNGAP1-206ENST00000479510 TRIM41Q8WV44 630 aa39.72■■■■□ 3.95
SYNGAP1-206ENST00000479510 TRIM26Q12899 539 aaPredicted RBP39.56■■■■□ 3.92
SYNGAP1-206ENST00000479510 BAZ1AQ9NRL2 1556 aaPredicted RBP39.5■■■■□ 3.91
SYNGAP1-206ENST00000479510 WIZO95785 1651 aa39.49■■■■□ 3.91
SYNGAP1-206ENST00000479510 EIF4G1Q04637 1599 aaKnown RBP39.2■■■■□ 3.87
SYNGAP1-206ENST00000479510 TOP2AP11388 1531 aaKnown RBP39.12■■■■□ 3.85
SYNGAP1-206ENST00000479510 SMARCA4P51532 1647 aa39.08■■■■□ 3.85
SYNGAP1-206ENST00000479510 FAM9AQ8IZU1 332 aaPredicted RBP39.05■■■■□ 3.84
SYNGAP1-206ENST00000479510 PPARGC1BQ86YN6 1023 aaKnown RBP39■■■■□ 3.83
SYNGAP1-206ENST00000479510 UNC13AQ9UPW8 1703 aa38.99■■■■□ 3.83
SYNGAP1-206ENST00000479510 ZEB1P37275 1124 aaPredicted RBP38.91■■■■□ 3.82
SYNGAP1-206ENST00000479510 SMARCA2P51531 1590 aa38.81■■■■□ 3.8
SYNGAP1-206ENST00000479510 CCDC88BA6NC98 1476 aa38.79■■■■□ 3.8
SYNGAP1-206ENST00000479510 BICRAQ9NZM4 1560 aa38.55■■■■□ 3.76
SYNGAP1-206ENST00000479510 PEG3Q9GZU2 1588 aa38.53■■■■□ 3.76
SYNGAP1-206ENST00000479510 ABCC8Q09428 1581 aa38.52■■■■□ 3.76
SYNGAP1-206ENST00000479510 EEA1Q15075 1411 aa38.46■■■■□ 3.75
SYNGAP1-206ENST00000479510 EHMT2Q96KQ7 1210 aa38.44■■■■□ 3.74
SYNGAP1-206ENST00000479510 WRNQ14191 1432 aaPredicted RBP eCLIP38.34■■■■□ 3.731e-7■■■■■ 66.8
SYNGAP1-206ENST00000479510 TNIKQ9UKE5 1360 aa38.23■■■■□ 3.71
SYNGAP1-206ENST00000479510 SOGA1O94964 1423 aa38.19■■■■□ 3.7
SYNGAP1-206ENST00000479510 PABPN1Q86U42 306 aaKnown RBP eCLIP38.18■■■■□ 3.7
SYNGAP1-206ENST00000479510 CEP162Q5TB80 1403 aa38.15■■■■□ 3.7
SYNGAP1-206ENST00000479510 CSRNP3Q8WYN3 585 aa38.1■■■■□ 3.69
SYNGAP1-206ENST00000479510 ATAD2BQ9ULI0 1458 aa38.05■■■■□ 3.68
SYNGAP1-206ENST00000479510 GOLGA3Q08378 1498 aa37.99■■■■□ 3.67
SYNGAP1-206ENST00000479510 RUSC2Q8N2Y8 1516 aa37.93■■■■□ 3.66
SYNGAP1-206ENST00000479510 BAZ1BQ9UIG0 1483 aaKnown RBP37.92■■■■□ 3.66
SYNGAP1-206ENST00000479510 SYNJ1O43426 1573 aa37.83■■■■□ 3.65
SYNGAP1-206ENST00000479510 KIF21BO75037 1637 aa37.83■■■■□ 3.65
SYNGAP1-206ENST00000479510 CEP164Q9UPV0 1460 aa37.81■■■■□ 3.64
SYNGAP1-206ENST00000479510 UBTFP17480 764 aaKnown RBP37.77■■■■□ 3.64
SYNGAP1-206ENST00000479510 CCER1Q8TC90 406 aaPredicted RBP37.7■■■■□ 3.63
SYNGAP1-206ENST00000479510 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.65■■■■□ 3.62
SYNGAP1-206ENST00000479510 TOP2BQ02880 1626 aa37.54■■■■□ 3.6
SYNGAP1-206ENST00000479510 HMGXB3Q12766 1538 aa37.48■■■■□ 3.59
SYNGAP1-206ENST00000479510 CLIP1P30622 1438 aa37.46■■■■□ 3.59
SYNGAP1-206ENST00000479510 BIVM-ERCC5R4GMW8 1640 aa37.45■■■■□ 3.58
SYNGAP1-206ENST00000479510 NCAPD3P42695 1498 aa37.42■■■■□ 3.58
SYNGAP1-206ENST00000479510 VPS8Q8N3P4 1428 aa37.38■■■■□ 3.57
SYNGAP1-206ENST00000479510 RAPGEF2Q9Y4G8 1499 aa37.32■■■■□ 3.57
SYNGAP1-206ENST00000479510 TTBK1Q5TCY1 1321 aaPredicted RBP37.29■■■■□ 3.56
SYNGAP1-206ENST00000479510 ERICH3Q5RHP9 1530 aa37.27■■■■□ 3.56
SYNGAP1-206ENST00000479510 PRXQ9BXM0 1461 aa37.16■■■■□ 3.54
SYNGAP1-206ENST00000479510 APLP2Q06481 763 aa37.08■■■■□ 3.53
SYNGAP1-206ENST00000479510 CFTRP13569 1480 aa37.07■■■■□ 3.53
SYNGAP1-206ENST00000479510 CUX1P39880 1505 aa37.05■■■■□ 3.52
SYNGAP1-206ENST00000479510 DIEXFQ68CQ4 756 aaKnown RBP37■■■■□ 3.51
SYNGAP1-206ENST00000479510 KIF27Q86VH2 1401 aa36.97■■■■□ 3.51
SYNGAP1-206ENST00000479510 SCAF1Q9H7N4 1312 aaKnown RBP36.9■■■■□ 3.5
SYNGAP1-206ENST00000479510 PRDM2Q13029 1718 aa36.89■■■■□ 3.5
SYNGAP1-206ENST00000479510 ARAP1Q96P48 1450 aa36.86■■■■□ 3.49
SYNGAP1-206ENST00000479510 ZNF316A6NFI3 1004 aaPredicted RBP36.84■■■■□ 3.49
SYNGAP1-206ENST00000479510 HNRNPUL2Q1KMD3 747 aaKnown RBP36.82■■■■□ 3.48
SYNGAP1-206ENST00000479510 ACIN1Q9UKV3 1341 aaKnown RBP36.75■■■■□ 3.47
SYNGAP1-206ENST00000479510 CLSPNQ9HAW4 1339 aa36.67■■■■□ 3.46
SYNGAP1-206ENST00000479510 CENPBP07199 599 aaPredicted RBP36.66■■■■□ 3.46
SYNGAP1-206ENST00000479510 RANGAP1P46060 587 aaPredicted RBP36.63■■■■□ 3.45
SYNGAP1-206ENST00000479510 PELP1Q8IZL8 1130 aaKnown RBP36.61■■■■□ 3.45
SYNGAP1-206ENST00000479510 CADPSQ9ULU8 1353 aa36.6■■■■□ 3.45
SYNGAP1-206ENST00000479510 RRBP1Q9P2E9 1410 aaKnown RBP36.57■■■■□ 3.44
SYNGAP1-206ENST00000479510 ARHGAP35Q9NRY4 1499 aa36.54■■■■□ 3.44
SYNGAP1-206ENST00000479510 NEUROD1Q13562 356 aa36.52■■■■□ 3.44
SYNGAP1-206ENST00000479510 IGF1RP08069 1367 aa36.49■■■■□ 3.43
SYNGAP1-206ENST00000479510 CUX2O14529 1486 aa36.48■■■■□ 3.43
SYNGAP1-206ENST00000479510 KANK4Q5T7N3 995 aaPredicted RBP36.45■■■■□ 3.43
SYNGAP1-206ENST00000479510 MAP3K1Q13233 1512 aa36.43■■■■□ 3.42
SYNGAP1-206ENST00000479510 DHX57Q6P158 1386 aaKnown RBP36.39■■■■□ 3.42
SYNGAP1-206ENST00000479510 FGD5Q6ZNL6 1462 aa36.37■■■■□ 3.41
SYNGAP1-206ENST00000479510 CARMIL1Q5VZK9 1371 aa36.32■■■■□ 3.41
SYNGAP1-206ENST00000479510 CCNB3Q8WWL7 1395 aa36.31■■■■□ 3.4
SYNGAP1-206ENST00000479510 CC2D2AQ9P2K1 1620 aa36.26■■■■□ 3.4
SYNGAP1-206ENST00000479510 TIAM1Q13009 1591 aa36.23■■■■□ 3.39
SYNGAP1-206ENST00000479510 FANCD2Q9BXW9 1451 aa36.2■■■■□ 3.39
SYNGAP1-206ENST00000479510 GTF3C3Q9Y5Q9 886 aa36.16■■■■□ 3.38
SYNGAP1-206ENST00000479510 DNMBPQ6XZF7 1577 aa36.16■■■■□ 3.38
SYNGAP1-206ENST00000479510 FHAD1B1AJZ9 1412 aa36.15■■■■□ 3.38
SYNGAP1-206ENST00000479510 MIER1Q8N108 512 aa36.12■■■■□ 3.37
SYNGAP1-206ENST00000479510 ABCA10Q8WWZ4 1543 aa36.09■■■■□ 3.37
SYNGAP1-206ENST00000479510 LRRC9Q6ZRR7 1453 aa36.06■■■■□ 3.36
SYNGAP1-206ENST00000479510 CFAP43Q8NDM7 1665 aa36.02■■■■□ 3.36
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms