Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 EGFEM1P-202ENST00000431685 1563 ntBASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CHMP1AQ9HD42 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 LINC01023-201ENST00000606054 436 ntBASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 AC083849.1-201ENST00000615227 514 ntBASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CHMP1AQ9HD42 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 AC092171.3-201ENST00000610122 2651 ntBASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 KRT8P10-201ENST00000450021 1447 ntBASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 RNF216P1-203ENST00000404404 2427 ntBASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 AC124947.2-201ENST00000547118 1133 ntBASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 FUT8-AS1-201ENST00000621019 1521 ntBASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CHMP1AQ9HD42 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 TCAF2P1-201ENST00000291129 2421 ntBASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CHMP1AQ9HD42 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms