Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC21.84■■□□□ 1.09
COL18A1P39060 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL18A1P39060 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.84■■□□□ 1.09
COL18A1P39060 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL18A1P39060 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL18A1P39060 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
COL18A1P39060 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.84■■□□□ 1.09
COL18A1P39060 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL18A1P39060 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL18A1P39060 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL18A1P39060 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL18A1P39060 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL18A1P39060 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL18A1P39060 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC21.84■■□□□ 1.09
COL18A1P39060 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC21.84■■□□□ 1.09
COL18A1P39060 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.84■■□□□ 1.09
COL18A1P39060 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC21.83■■□□□ 1.09
COL18A1P39060 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL18A1P39060 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC21.83■■□□□ 1.09
COL18A1P39060 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL18A1P39060 PCDHB17P-201ENST00000539533 2393 ntBASIC21.83■■□□□ 1.09
COL18A1P39060 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL18A1P39060 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
COL18A1P39060 GALT-202ENST00000450095 1280 ntTSL 2 BASIC21.83■■□□□ 1.09
COL18A1P39060 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL18A1P39060 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL18A1P39060 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
COL18A1P39060 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.08
COL18A1P39060 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
COL18A1P39060 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC21.83■■□□□ 1.08
COL18A1P39060 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC21.83■■□□□ 1.08
COL18A1P39060 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
COL18A1P39060 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC21.83■■□□□ 1.08
COL18A1P39060 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL18A1P39060 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL18A1P39060 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL18A1P39060 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC21.82■■□□□ 1.08
COL18A1P39060 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
COL18A1P39060 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL18A1P39060 AC007389.4-201ENST00000454674 793 ntBASIC21.82■■□□□ 1.08
COL18A1P39060 PTK7-212ENST00000476760 902 ntTSL 2 BASIC21.82■■□□□ 1.08
COL18A1P39060 RRP7BP-205ENST00000566851 833 ntBASIC21.82■■□□□ 1.08
COL18A1P39060 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL18A1P39060 AL512343.1-201ENST00000605837 169 ntBASIC21.82■■□□□ 1.08
COL18A1P39060 WNT11-204ENST00000621122 789 ntTSL 5 BASIC21.82■■□□□ 1.08
COL18A1P39060 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL18A1P39060 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL18A1P39060 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL18A1P39060 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
COL18A1P39060 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
COL18A1P39060 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL18A1P39060 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.82■■□□□ 1.08
COL18A1P39060 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL18A1P39060 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC21.82■■□□□ 1.08
COL18A1P39060 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC21.82■■□□□ 1.08
COL18A1P39060 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL18A1P39060 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL18A1P39060 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL18A1P39060 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC21.82■■□□□ 1.08
COL18A1P39060 AC134043.2-201ENST00000624206 2238 ntBASIC21.82■■□□□ 1.08
COL18A1P39060 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL18A1P39060 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC21.82■■□□□ 1.08
COL18A1P39060 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
COL18A1P39060 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL18A1P39060 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL18A1P39060 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL18A1P39060 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
COL18A1P39060 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
COL18A1P39060 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL18A1P39060 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL18A1P39060 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC21.81■■□□□ 1.08
COL18A1P39060 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.81■■□□□ 1.08
COL18A1P39060 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL18A1P39060 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL18A1P39060 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL18A1P39060 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC21.81■■□□□ 1.08
COL18A1P39060 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC21.81■■□□□ 1.08
COL18A1P39060 MYCLP2-201ENST00000449268 967 ntBASIC21.81■■□□□ 1.08
COL18A1P39060 AC011495.1-201ENST00000498085 584 ntBASIC21.81■■□□□ 1.08
COL18A1P39060 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC21.81■■□□□ 1.08
COL18A1P39060 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC21.81■■□□□ 1.08
COL18A1P39060 AC025048.3-201ENST00000590609 569 ntBASIC21.81■■□□□ 1.08
COL18A1P39060 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL18A1P39060 AC005702.4-201ENST00000618393 416 ntBASIC21.81■■□□□ 1.08
COL18A1P39060 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC21.81■■□□□ 1.08
COL18A1P39060 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
COL18A1P39060 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
COL18A1P39060 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
COL18A1P39060 AL512652.2-201ENST00000625156 1716 ntBASIC21.81■■□□□ 1.08
COL18A1P39060 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL18A1P39060 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL18A1P39060 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL18A1P39060 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL18A1P39060 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL18A1P39060 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL18A1P39060 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL18A1P39060 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL18A1P39060 KRT223P-202ENST00000449164 1292 ntBASIC21.8■■□□□ 1.08
COL18A1P39060 RHOA-206ENST00000454011 889 ntTSL 2 BASIC21.8■■□□□ 1.08
COL18A1P39060 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms