RNA–Protein interactions for RNA: ENST00000356141.8

NPAS3-202, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NPAS3, Length 2,802 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-202ENST00000356141 NISCHQ9Y2I1 1504 aa38.2■■■■□ 3.71
NPAS3-202ENST00000356141 DCAF8L2P0C7V8 631 aa32.71■■■□□ 2.83
NPAS3-202ENST00000356141 SHROOM4Q9ULL8 1493 aa32.65■■■□□ 2.82
NPAS3-202ENST00000356141 CCDC180Q9P1Z9 1646 aa32.6■■■□□ 2.81
NPAS3-202ENST00000356141 ZCCHC6Q5VYS8 1495 aaKnown RBP32.09■■■□□ 2.73
NPAS3-202ENST00000356141 SUPT5HO00267 1087 aaKnown RBP31.6■■■□□ 2.65
NPAS3-202ENST00000356141 ABCC9O60706 1549 aa31.55■■■□□ 2.64
NPAS3-202ENST00000356141 DCAF1Q9Y4B6 1507 aa31.02■■■□□ 2.56
NPAS3-202ENST00000356141 SCRIBQ14160 1630 aa30.92■■■□□ 2.54
NPAS3-202ENST00000356141 NACADO15069 1562 aa30.44■■■□□ 2.46
NPAS3-202ENST00000356141 MYO15BQ96JP2 1530 aa30.36■■■□□ 2.45
NPAS3-202ENST00000356141 RB1CC1Q8TDY2 1594 aa30.23■■■□□ 2.43
NPAS3-202ENST00000356141 PABPN1Q86U42 306 aaKnown RBP eCLIP30.18■■■□□ 2.42
NPAS3-202ENST00000356141 CECR2Q9BXF3 1484 aa30.1■■■□□ 2.41
NPAS3-202ENST00000356141 RSF1Q96T23 1441 aaPredicted RBP30.02■■■□□ 2.4
NPAS3-202ENST00000356141 CHIC1Q5VXU3 224 aa30■■■□□ 2.39
NPAS3-202ENST00000356141 MROH2BQ7Z745 1585 aa29.81■■■□□ 2.36
NPAS3-202ENST00000356141 UNC13AQ9UPW8 1703 aa29.78■■■□□ 2.36
NPAS3-202ENST00000356141 WIZO95785 1651 aa29.63■■■□□ 2.33
NPAS3-202ENST00000356141 BICRAQ9NZM4 1560 aa29.47■■■□□ 2.31
NPAS3-202ENST00000356141 EHMT2Q96KQ7 1210 aa29.42■■■□□ 2.3
NPAS3-202ENST00000356141 BAZ1AQ9NRL2 1556 aaPredicted RBP29.36■■■□□ 2.29
NPAS3-202ENST00000356141 LOC105371045A0A1W2PR82 267 aa29.36■■■□□ 2.29
NPAS3-202ENST00000356141 FAM9AQ8IZU1 332 aaPredicted RBP29.36■■■□□ 2.29
NPAS3-202ENST00000356141 TRIM41Q8WV44 630 aa29.28■■■□□ 2.28
NPAS3-202ENST00000356141 SMARCA4P51532 1647 aa29.26■■■□□ 2.28
NPAS3-202ENST00000356141 CCDC88BA6NC98 1476 aa28.98■■■□□ 2.23
NPAS3-202ENST00000356141 TOP2AP11388 1531 aaKnown RBP28.95■■■□□ 2.22
NPAS3-202ENST00000356141 SMARCA2P51531 1590 aa28.83■■■□□ 2.21
NPAS3-202ENST00000356141 ABCC8Q09428 1581 aa28.8■■■□□ 2.2
NPAS3-202ENST00000356141 ATAD2BQ9ULI0 1458 aa28.78■■■□□ 2.2
NPAS3-202ENST00000356141 BAZ1BQ9UIG0 1483 aaKnown RBP28.72■■■□□ 2.19
NPAS3-202ENST00000356141 EIF4G1Q04637 1599 aaKnown RBP28.6■■■□□ 2.17
NPAS3-202ENST00000356141 PEG3Q9GZU2 1588 aa28.51■■■□□ 2.15
NPAS3-202ENST00000356141 PCGF6Q9BYE7 350 aa28.48■■■□□ 2.15
NPAS3-202ENST00000356141 DNAJC5BQ9UF47 199 aa28.41■■■□□ 2.14
NPAS3-202ENST00000356141 PPARGC1BQ86YN6 1023 aaKnown RBP28.37■■■□□ 2.13
NPAS3-202ENST00000356141 SOGA1O94964 1423 aa28.36■■■□□ 2.13
NPAS3-202ENST00000356141 RUSC2Q8N2Y8 1516 aa28.3■■■□□ 2.12
NPAS3-202ENST00000356141 WRNQ14191 1432 aaPredicted RBP eCLIP28.26■■■□□ 2.11
NPAS3-202ENST00000356141 NCAPD3P42695 1498 aa28.24■■■□□ 2.11
NPAS3-202ENST00000356141 RANGAP1P46060 587 aaPredicted RBP28.18■■■□□ 2.1
NPAS3-202ENST00000356141 TTBK1Q5TCY1 1321 aaPredicted RBP28.17■■■□□ 2.1
NPAS3-202ENST00000356141 CC2D2AQ9P2K1 1620 aa28.17■■■□□ 2.1
NPAS3-202ENST00000356141 SYNJ1O43426 1573 aa28.14■■■□□ 2.1
NPAS3-202ENST00000356141 UBTFP17480 764 aaKnown RBP28.12■■■□□ 2.09
NPAS3-202ENST00000356141 HMGXB3Q12766 1538 aa28.09■■■□□ 2.09
NPAS3-202ENST00000356141 CSRNP3Q8WYN3 585 aa28.06■■■□□ 2.08
NPAS3-202ENST00000356141 CFTRP13569 1480 aa27.84■■■□□ 2.05
NPAS3-202ENST00000356141 NESP48681 1621 aa27.83■■■□□ 2.05
NPAS3-202ENST00000356141 TRIM26Q12899 539 aaPredicted RBP27.8■■■□□ 2.04
NPAS3-202ENST00000356141 CADPSQ9ULU8 1353 aa27.79■■■□□ 2.04
NPAS3-202ENST00000356141 CUX1P39880 1505 aa27.77■■■□□ 2.04
NPAS3-202ENST00000356141 CEP162Q5TB80 1403 aa27.73■■■□□ 2.03
NPAS3-202ENST00000356141 TOP2BQ02880 1626 aa27.7■■■□□ 2.03
NPAS3-202ENST00000356141 EEA1Q15075 1411 aa27.65■■■□□ 2.02
NPAS3-202ENST00000356141 RAPGEF2Q9Y4G8 1499 aa27.64■■■□□ 2.02
NPAS3-202ENST00000356141 GOLGA3Q08378 1498 aa27.63■■■□□ 2.01
NPAS3-202ENST00000356141 TNIKQ9UKE5 1360 aa27.6■■■□□ 2.01
NPAS3-202ENST00000356141 HRCP23327 699 aa27.58■■■□□ 2.01
NPAS3-202ENST00000356141 FANCD2Q9BXW9 1451 aa27.57■■■□□ 2
NPAS3-202ENST00000356141 BIVM-ERCC5R4GMW8 1640 aa27.54■■■□□ 2
NPAS3-202ENST00000356141 CEP164Q9UPV0 1460 aa27.52■■■□□ 2
NPAS3-202ENST00000356141 CUX2O14529 1486 aa27.47■■□□□ 1.99
NPAS3-202ENST00000356141 FGD5Q6ZNL6 1462 aa27.45■■□□□ 1.99
NPAS3-202ENST00000356141 RAD54L2Q9Y4B4 1467 aa27.43■■□□□ 1.98
NPAS3-202ENST00000356141 KIF27Q86VH2 1401 aa27.42■■□□□ 1.98
NPAS3-202ENST00000356141 CLIP1P30622 1438 aa27.4■■□□□ 1.98
NPAS3-202ENST00000356141 KIF21BO75037 1637 aa27.35■■□□□ 1.97
NPAS3-202ENST00000356141 PRDM2Q13029 1718 aa27.34■■□□□ 1.97
NPAS3-202ENST00000356141 P3H3Q8IVL6 736 aa27.26■■□□□ 1.96
NPAS3-202ENST00000356141 IGF1RP08069 1367 aa27.25■■□□□ 1.95
NPAS3-202ENST00000356141 TOPBP1Q92547 1522 aa27.25■■□□□ 1.95
NPAS3-202ENST00000356141 PRXQ9BXM0 1461 aa27.25■■□□□ 1.95
NPAS3-202ENST00000356141 TDRD9Q8NDG6 1382 aaKnown RBP27.22■■□□□ 1.95
NPAS3-202ENST00000356141 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.22■■□□□ 1.95
NPAS3-202ENST00000356141 POLA1P09884 1462 aaPredicted RBP27.22■■□□□ 1.95
NPAS3-202ENST00000356141 URB2Q14146 1524 aaKnown RBP27.21■■□□□ 1.95
NPAS3-202ENST00000356141 APLP2Q06481 763 aa27.19■■□□□ 1.94
NPAS3-202ENST00000356141 CARMIL1Q5VZK9 1371 aa27.16■■□□□ 1.94
NPAS3-202ENST00000356141 PDS5BQ9NTI5 1447 aa27.14■■□□□ 1.94
NPAS3-202ENST00000356141 LAMC3Q9Y6N6 1575 aa27.14■■□□□ 1.94
NPAS3-202ENST00000356141 DNMBPQ6XZF7 1577 aa27.13■■□□□ 1.93
NPAS3-202ENST00000356141 KIF21AQ7Z4S6 1674 aa27.13■■□□□ 1.93
NPAS3-202ENST00000356141 ATP1B4Q9UN42 357 aaPredicted RBP27.13■■□□□ 1.93
NPAS3-202ENST00000356141 HNRNPUL2Q1KMD3 747 aaKnown RBP27.09■■□□□ 1.93
NPAS3-202ENST00000356141 VPS8Q8N3P4 1428 aa27.06■■□□□ 1.92
NPAS3-202ENST00000356141 ERICH3Q5RHP9 1530 aa27.03■■□□□ 1.92
NPAS3-202ENST00000356141 ARAP1Q96P48 1450 aa27.02■■□□□ 1.92
NPAS3-202ENST00000356141 KANK4Q5T7N3 995 aaPredicted RBP27■■□□□ 1.91
NPAS3-202ENST00000356141 CCER1Q8TC90 406 aaPredicted RBP26.98■■□□□ 1.91
NPAS3-202ENST00000356141 ABCA10Q8WWZ4 1543 aa26.93■■□□□ 1.9
NPAS3-202ENST00000356141 ARHGAP35Q9NRY4 1499 aa26.91■■□□□ 1.9
NPAS3-202ENST00000356141 AQRO60306 1485 aaKnown RBP eCLIP26.9■■□□□ 1.9
NPAS3-202ENST00000356141 ERCC6Q03468 1493 aa26.87■■□□□ 1.89
NPAS3-202ENST00000356141 ITGAEP38570 1179 aa26.85■■□□□ 1.89
NPAS3-202ENST00000356141 GAPVD1Q14C86 1478 aa26.84■■□□□ 1.89
NPAS3-202ENST00000356141 FHOD3Q2V2M9 1422 aa26.79■■□□□ 1.88
NPAS3-202ENST00000356141 ARID3CA6NKF2 412 aa26.77■■□□□ 1.88
NPAS3-202ENST00000356141 MRC2Q9UBG0 1479 aa26.76■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms