Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
LIMD1Q9UGP4 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 SERBP1P5-201ENST00000510079 1181 ntBASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 AL359881.2-201ENST00000602973 570 ntBASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 GNAS-203ENST00000306120 1878 ntBASIC17.61■□□□□ 0.41
LIMD1Q9UGP4 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 AL009183.1-201ENST00000603760 355 ntBASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 AL662799.1-202ENST00000614205 422 ntBASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 AC025048.6-201ENST00000634326 1161 ntBASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 AC084121.4-201ENST00000641598 221 ntBASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 AF228730.8-201ENST00000642140 221 ntBASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMD1Q9UGP4 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms