RNA–Protein interactions for RNA: ENST00000541982.5

CD4-210, Transcript of CD4 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD4, Length 1,187 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-210ENST00000541982 NISCHQ9Y2I1 1504 aa39.4■■■■□ 3.9
CD4-210ENST00000541982 ABCC9O60706 1549 aa35.9■■■■□ 3.34
CD4-210ENST00000541982 CCDC180Q9P1Z9 1646 aa35.57■■■■□ 3.28
CD4-210ENST00000541982 RB1CC1Q8TDY2 1594 aa34.06■■■■□ 3.04
CD4-210ENST00000541982 DNAJC5BQ9UF47 199 aa33.99■■■■□ 3.03
CD4-210ENST00000541982 NACADO15069 1562 aa33.73■■■□□ 2.99
CD4-210ENST00000541982 DCAF8L2P0C7V8 631 aa33.44■■■□□ 2.94
CD4-210ENST00000541982 PABPN1Q86U42 306 aaKnown RBP eCLIP33.35■■■□□ 2.93
CD4-210ENST00000541982 UNC13AQ9UPW8 1703 aa33.24■■■□□ 2.91
CD4-210ENST00000541982 MYO15BQ96JP2 1530 aa33.15■■■□□ 2.9
CD4-210ENST00000541982 BICRAQ9NZM4 1560 aa33■■■□□ 2.87
CD4-210ENST00000541982 SHROOM4Q9ULL8 1493 aa32.63■■■□□ 2.81
CD4-210ENST00000541982 DCAF1Q9Y4B6 1507 aa32.56■■■□□ 2.8
CD4-210ENST00000541982 ZCCHC6Q5VYS8 1495 aaKnown RBP32.54■■■□□ 2.8
CD4-210ENST00000541982 CC2D2AQ9P2K1 1620 aa32.44■■■□□ 2.78
CD4-210ENST00000541982 CECR2Q9BXF3 1484 aa32.42■■■□□ 2.78
CD4-210ENST00000541982 SCRIBQ14160 1630 aa32.32■■■□□ 2.76
CD4-210ENST00000541982 EIF4G1Q04637 1599 aaKnown RBP32.27■■■□□ 2.76
CD4-210ENST00000541982 DNAJC5Q9H3Z4 198 aa31.61■■■□□ 2.65
CD4-210ENST00000541982 CUX2O14529 1486 aa31.18■■■□□ 2.58
CD4-210ENST00000541982 NCAPD3P42695 1498 aa31.13■■■□□ 2.57
CD4-210ENST00000541982 ERCC6Q03468 1493 aa31.08■■■□□ 2.57
CD4-210ENST00000541982 ATAD2BQ9ULI0 1458 aa30.95■■■□□ 2.55
CD4-210ENST00000541982 SMARCA2P51531 1590 aa30.89■■■□□ 2.54
CD4-210ENST00000541982 HMGXB3Q12766 1538 aa30.86■■■□□ 2.53
CD4-210ENST00000541982 SMARCA4P51532 1647 aa30.81■■■□□ 2.52
CD4-210ENST00000541982 NESP48681 1621 aa30.69■■■□□ 2.5
CD4-210ENST00000541982 BAZ1BQ9UIG0 1483 aaKnown RBP30.65■■■□□ 2.5
CD4-210ENST00000541982 BAZ1AQ9NRL2 1556 aaPredicted RBP30.64■■■□□ 2.5
CD4-210ENST00000541982 PEG3Q9GZU2 1588 aa30.54■■■□□ 2.48
CD4-210ENST00000541982 LAMC3Q9Y6N6 1575 aa30.51■■■□□ 2.47
CD4-210ENST00000541982 THOC2Q8NI27 1593 aaKnown RBP30.5■■■□□ 2.47
CD4-210ENST00000541982 PDS5BQ9NTI5 1447 aa30.37■■■□□ 2.45
CD4-210ENST00000541982 KIF21AQ7Z4S6 1674 aa30.33■■■□□ 2.45
CD4-210ENST00000541982 MROH2BQ7Z745 1585 aa30.31■■■□□ 2.44
CD4-210ENST00000541982 CADPSQ9ULU8 1353 aa30.16■■■□□ 2.42
CD4-210ENST00000541982 MRC2Q9UBG0 1479 aa30.09■■■□□ 2.41
CD4-210ENST00000541982 TRIM41Q8WV44 630 aa30.03■■■□□ 2.4
CD4-210ENST00000541982 WDR62O43379 1518 aa30.01■■■□□ 2.4
CD4-210ENST00000541982 WIZO95785 1651 aa29.94■■■□□ 2.38
CD4-210ENST00000541982 CEP164Q9UPV0 1460 aa29.9■■■□□ 2.38
CD4-210ENST00000541982 FANCD2Q9BXW9 1451 aa29.8■■■□□ 2.36
CD4-210ENST00000541982 CFTRP13569 1480 aa29.72■■■□□ 2.35
CD4-210ENST00000541982 OSCARQ8IYS5 282 aa29.7■■■□□ 2.35
CD4-210ENST00000541982 TOP2AP11388 1531 aaKnown RBP29.56■■■□□ 2.32
CD4-210ENST00000541982 URB2Q14146 1524 aaKnown RBP29.55■■■□□ 2.32
CD4-210ENST00000541982 RSF1Q96T23 1441 aaPredicted RBP29.55■■■□□ 2.32
CD4-210ENST00000541982 PRDM2Q13029 1718 aa29.43■■■□□ 2.3
CD4-210ENST00000541982 IFT140Q96RY7 1462 aa29.32■■■□□ 2.28
CD4-210ENST00000541982 RIMBP3CA6NJZ7 1639 aa29.3■■■□□ 2.28
CD4-210ENST00000541982 RIMBP3BA6NNM3 1639 aa29.3■■■□□ 2.28
CD4-210ENST00000541982 RIMBP3Q9UFD9 1639 aa29.3■■■□□ 2.28
CD4-210ENST00000541982 ZNF608Q9ULD9 1512 aaPredicted RBP29.24■■■□□ 2.27
CD4-210ENST00000541982 CCDC88BA6NC98 1476 aa29.22■■■□□ 2.27
CD4-210ENST00000541982 TOPBP1Q92547 1522 aa29.19■■■□□ 2.26
CD4-210ENST00000541982 ABCC8Q09428 1581 aa29.18■■■□□ 2.26
CD4-210ENST00000541982 ARHGEF11O15085 1522 aa29.17■■■□□ 2.26
CD4-210ENST00000541982 EIF4G3O43432 1585 aaKnown RBP29.09■■■□□ 2.25
CD4-210ENST00000541982 DNMBPQ6XZF7 1577 aa29.06■■■□□ 2.24
CD4-210ENST00000541982 CYB5RLQ6IPT4 315 aa29■■■□□ 2.23
CD4-210ENST00000541982 CHD1O14646 1710 aa28.96■■■□□ 2.23
CD4-210ENST00000541982 TARBP1Q13395 1621 aaKnown RBP28.95■■■□□ 2.23
CD4-210ENST00000541982 AQRO60306 1485 aaKnown RBP eCLIP28.95■■■□□ 2.22
CD4-210ENST00000541982 FBLN2P98095 1184 aa28.88■■■□□ 2.21
CD4-210ENST00000541982 POLA1P09884 1462 aaPredicted RBP28.85■■■□□ 2.21
CD4-210ENST00000541982 ARAP1Q96P48 1450 aa28.84■■■□□ 2.21
CD4-210ENST00000541982 TRHP20396 242 aaPredicted RBP28.83■■■□□ 2.21
CD4-210ENST00000541982 SOGA1O94964 1423 aa28.75■■■□□ 2.19
CD4-210ENST00000541982 RAD54L2Q9Y4B4 1467 aa28.73■■■□□ 2.19
CD4-210ENST00000541982 WDR97A6NE52 1622 aa28.72■■■□□ 2.19
CD4-210ENST00000541982 TDRD9Q8NDG6 1382 aaKnown RBP28.7■■■□□ 2.18
CD4-210ENST00000541982 SNAPC4Q5SXM2 1469 aa28.65■■■□□ 2.18
CD4-210ENST00000541982 CHMP7Q8WUX9 453 aaPredicted RBP28.63■■■□□ 2.17
CD4-210ENST00000541982 FGD5Q6ZNL6 1462 aa28.61■■■□□ 2.17
CD4-210ENST00000541982 CLASP1Q7Z460 1538 aa28.61■■■□□ 2.17
CD4-210ENST00000541982 SYNJ1O43426 1573 aa28.61■■■□□ 2.17
CD4-210ENST00000541982 MAGI1Q96QZ7 1491 aaPredicted RBP28.6■■■□□ 2.17
CD4-210ENST00000541982 GRIN2BQ13224 1484 aa28.55■■■□□ 2.16
CD4-210ENST00000541982 CUX1P39880 1505 aa28.51■■■□□ 2.15
CD4-210ENST00000541982 SYNJ2O15056 1496 aa28.5■■■□□ 2.15
CD4-210ENST00000541982 PBRM1Q86U86 1689 aa28.39■■■□□ 2.14
CD4-210ENST00000541982 GAPVD1Q14C86 1478 aa28.39■■■□□ 2.13
CD4-210ENST00000541982 AEBP2Q6ZN18 517 aaPredicted RBP28.34■■■□□ 2.13
CD4-210ENST00000541982 ABCA10Q8WWZ4 1543 aa28.29■■■□□ 2.12
CD4-210ENST00000541982 ABCA5Q8WWZ7 1642 aa28.27■■■□□ 2.12
CD4-210ENST00000541982 GRIN2AQ12879 1464 aa28.17■■■□□ 2.1
CD4-210ENST00000541982 WRNQ14191 1432 aaPredicted RBP eCLIP28.12■■■□□ 2.09
CD4-210ENST00000541982 NUP160Q12769 1436 aa28.09■■■□□ 2.09
CD4-210ENST00000541982 ADAMTS12P58397 1594 aa28.08■■■□□ 2.09
CD4-210ENST00000541982 ERCC6L2Q5T890 1561 aa28.08■■■□□ 2.09
CD4-210ENST00000541982 CEP170Q5SW79 1584 aa28.07■■■□□ 2.08
CD4-210ENST00000541982 FHAD1B1AJZ9 1412 aa28.02■■■□□ 2.08
CD4-210ENST00000541982 SHROOM2Q13796 1616 aa28■■■□□ 2.07
CD4-210ENST00000541982 TOP2BQ02880 1626 aa27.98■■■□□ 2.07
CD4-210ENST00000541982 BIVM-ERCC5R4GMW8 1640 aa27.98■■■□□ 2.07
CD4-210ENST00000541982 ERICH3Q5RHP9 1530 aa27.95■■■□□ 2.06
CD4-210ENST00000541982 SUPT5HO00267 1087 aaKnown RBP27.94■■■□□ 2.06
CD4-210ENST00000541982 KIF13AQ9H1H9 1805 aa27.85■■■□□ 2.05
CD4-210ENST00000541982 PRG4Q92954 1404 aaPredicted RBP27.85■■■□□ 2.05
CD4-210ENST00000541982 JPH4Q96JJ6 628 aa27.82■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms