Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
TRIM49D1C9J1S8 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
TRIM49D1C9J1S8 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM49D1C9J1S8 TP73-AS1-210ENST00000637775 1455 ntBASIC17.03■□□□□ 0.32
TRIM49D1C9J1S8 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM49D1C9J1S8 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM49D1C9J1S8 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM49D1C9J1S8 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.03■□□□□ 0.32
TRIM49D1C9J1S8 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.03■□□□□ 0.32
TRIM49D1C9J1S8 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM49D1C9J1S8 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM49D1C9J1S8 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 AC211429.1-201ENST00000415277 523 ntBASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 AL136038.3-201ENST00000561909 1096 ntBASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM49D1C9J1S8 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.31
TRIM49D1C9J1S8 AC148477.5-201ENST00000625164 1645 ntBASIC17.02■□□□□ 0.31
TRIM49D1C9J1S8 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRIM49D1C9J1S8 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRIM49D1C9J1S8 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TRIM49D1C9J1S8 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.02■□□□□ 0.31
TRIM49D1C9J1S8 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
TRIM49D1C9J1S8 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TRIM49D1C9J1S8 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRIM49D1C9J1S8 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.02■□□□□ 0.31
TRIM49D1C9J1S8 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 LINC01238-205ENST00000567549 1107 ntBASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM49D1C9J1S8 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM49D1C9J1S8 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms