RNA–Protein interactions for RNA: ENST00000431146.6

USHBP1-203, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2 BASIC

Gene USHBP1, Length 2,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-203ENST00000431146 NISCHQ9Y2I1 1504 aa37.01■■■■□ 3.52
USHBP1-203ENST00000431146 CCDC180Q9P1Z9 1646 aa32.02■■■□□ 2.72
USHBP1-203ENST00000431146 ZCCHC6Q5VYS8 1495 aaKnown RBP31.13■■■□□ 2.57
USHBP1-203ENST00000431146 DCAF8L2P0C7V8 631 aa30.77■■■□□ 2.52
USHBP1-203ENST00000431146 SHROOM4Q9ULL8 1493 aa30.72■■■□□ 2.51
USHBP1-203ENST00000431146 DCAF1Q9Y4B6 1507 aa30.44■■■□□ 2.46
USHBP1-203ENST00000431146 ABCC9O60706 1549 aa30.29■■■□□ 2.44
USHBP1-203ENST00000431146 MYO15BQ96JP2 1530 aa29.92■■■□□ 2.38
USHBP1-203ENST00000431146 NACADO15069 1562 aa29.76■■■□□ 2.36
USHBP1-203ENST00000431146 SCRIBQ14160 1630 aa29.73■■■□□ 2.35
USHBP1-203ENST00000431146 SUPT5HO00267 1087 aaKnown RBP29.67■■■□□ 2.34
USHBP1-203ENST00000431146 RB1CC1Q8TDY2 1594 aa29.49■■■□□ 2.31
USHBP1-203ENST00000431146 UNC13AQ9UPW8 1703 aa29.05■■■□□ 2.24
USHBP1-203ENST00000431146 RSF1Q96T23 1441 aaPredicted RBP28.88■■■□□ 2.21
USHBP1-203ENST00000431146 CECR2Q9BXF3 1484 aa28.87■■■□□ 2.21
USHBP1-203ENST00000431146 PABPN1Q86U42 306 aaKnown RBP eCLIP28.7■■■□□ 2.18
USHBP1-203ENST00000431146 MROH2BQ7Z745 1585 aa28.7■■■□□ 2.18
USHBP1-203ENST00000431146 BICRAQ9NZM4 1560 aa28.68■■■□□ 2.18
USHBP1-203ENST00000431146 BAZ1AQ9NRL2 1556 aaPredicted RBP28.52■■■□□ 2.16
USHBP1-203ENST00000431146 WIZO95785 1651 aa28.52■■■□□ 2.16
USHBP1-203ENST00000431146 CHIC1Q5VXU3 224 aa28.44■■■□□ 2.14
USHBP1-203ENST00000431146 SMARCA4P51532 1647 aa28.41■■■□□ 2.14
USHBP1-203ENST00000431146 TOP2AP11388 1531 aaKnown RBP28.09■■■□□ 2.09
USHBP1-203ENST00000431146 PEG3Q9GZU2 1588 aa27.94■■■□□ 2.06
USHBP1-203ENST00000431146 CCDC88BA6NC98 1476 aa27.89■■■□□ 2.06
USHBP1-203ENST00000431146 SMARCA2P51531 1590 aa27.89■■■□□ 2.06
USHBP1-203ENST00000431146 ATAD2BQ9ULI0 1458 aa27.87■■■□□ 2.05
USHBP1-203ENST00000431146 EIF4G1Q04637 1599 aaKnown RBP27.78■■■□□ 2.04
USHBP1-203ENST00000431146 TRIM41Q8WV44 630 aa27.75■■■□□ 2.03
USHBP1-203ENST00000431146 BAZ1BQ9UIG0 1483 aaKnown RBP27.74■■■□□ 2.03
USHBP1-203ENST00000431146 LOC105371045A0A1W2PR82 267 aa27.51■■□□□ 1.99
USHBP1-203ENST00000431146 ABCC8Q09428 1581 aa27.51■■□□□ 1.99
USHBP1-203ENST00000431146 NCAPD3P42695 1498 aa27.5■■□□□ 1.99
USHBP1-203ENST00000431146 HMGXB3Q12766 1538 aa27.47■■□□□ 1.99
USHBP1-203ENST00000431146 FAM9AQ8IZU1 332 aaPredicted RBP27.43■■□□□ 1.98
USHBP1-203ENST00000431146 CC2D2AQ9P2K1 1620 aa27.34■■□□□ 1.97
USHBP1-203ENST00000431146 EHMT2Q96KQ7 1210 aa27.18■■□□□ 1.94
USHBP1-203ENST00000431146 WRNQ14191 1432 aaPredicted RBP eCLIP27.16■■□□□ 1.94
USHBP1-203ENST00000431146 SYNJ1O43426 1573 aa27.1■■□□□ 1.93
USHBP1-203ENST00000431146 SOGA1O94964 1423 aa27.03■■□□□ 1.92
USHBP1-203ENST00000431146 CFTRP13569 1480 aa27.01■■□□□ 1.91
USHBP1-203ENST00000431146 RUSC2Q8N2Y8 1516 aa26.95■■□□□ 1.9
USHBP1-203ENST00000431146 PRDM2Q13029 1718 aa26.88■■□□□ 1.89
USHBP1-203ENST00000431146 CADPSQ9ULU8 1353 aa26.88■■□□□ 1.89
USHBP1-203ENST00000431146 TOP2BQ02880 1626 aa26.87■■□□□ 1.89
USHBP1-203ENST00000431146 BIVM-ERCC5R4GMW8 1640 aa26.82■■□□□ 1.88
USHBP1-203ENST00000431146 EEA1Q15075 1411 aa26.79■■□□□ 1.88
USHBP1-203ENST00000431146 CUX1P39880 1505 aa26.79■■□□□ 1.88
USHBP1-203ENST00000431146 CSRNP3Q8WYN3 585 aa26.78■■□□□ 1.88
USHBP1-203ENST00000431146 DNAJC5BQ9UF47 199 aa26.78■■□□□ 1.88
USHBP1-203ENST00000431146 NESP48681 1621 aa26.71■■□□□ 1.87
USHBP1-203ENST00000431146 FANCD2Q9BXW9 1451 aa26.62■■□□□ 1.85
USHBP1-203ENST00000431146 UBTFP17480 764 aaKnown RBP26.56■■□□□ 1.84
USHBP1-203ENST00000431146 GOLGA3Q08378 1498 aa26.55■■□□□ 1.84
USHBP1-203ENST00000431146 PCGF6Q9BYE7 350 aa26.54■■□□□ 1.84
USHBP1-203ENST00000431146 LAMC3Q9Y6N6 1575 aa26.52■■□□□ 1.84
USHBP1-203ENST00000431146 TNIKQ9UKE5 1360 aa26.51■■□□□ 1.83
USHBP1-203ENST00000431146 KIF21BO75037 1637 aa26.51■■□□□ 1.83
USHBP1-203ENST00000431146 CEP164Q9UPV0 1460 aa26.51■■□□□ 1.83
USHBP1-203ENST00000431146 CEP162Q5TB80 1403 aa26.48■■□□□ 1.83
USHBP1-203ENST00000431146 FGD5Q6ZNL6 1462 aa26.45■■□□□ 1.82
USHBP1-203ENST00000431146 RAPGEF2Q9Y4G8 1499 aa26.44■■□□□ 1.82
USHBP1-203ENST00000431146 KIF27Q86VH2 1401 aa26.41■■□□□ 1.82
USHBP1-203ENST00000431146 DNMBPQ6XZF7 1577 aa26.38■■□□□ 1.81
USHBP1-203ENST00000431146 TOPBP1Q92547 1522 aa26.36■■□□□ 1.81
USHBP1-203ENST00000431146 CUX2O14529 1486 aa26.35■■□□□ 1.81
USHBP1-203ENST00000431146 KIF21AQ7Z4S6 1674 aa26.33■■□□□ 1.81
USHBP1-203ENST00000431146 PDS5BQ9NTI5 1447 aa26.33■■□□□ 1.81
USHBP1-203ENST00000431146 PRXQ9BXM0 1461 aa26.31■■□□□ 1.8
USHBP1-203ENST00000431146 TRIM26Q12899 539 aaPredicted RBP26.3■■□□□ 1.8
USHBP1-203ENST00000431146 PPARGC1BQ86YN6 1023 aaKnown RBP26.3■■□□□ 1.8
USHBP1-203ENST00000431146 URB2Q14146 1524 aaKnown RBP26.3■■□□□ 1.8
USHBP1-203ENST00000431146 POLA1P09884 1462 aaPredicted RBP26.27■■□□□ 1.8
USHBP1-203ENST00000431146 RAD54L2Q9Y4B4 1467 aa26.27■■□□□ 1.8
USHBP1-203ENST00000431146 ERICH3Q5RHP9 1530 aa26.25■■□□□ 1.79
USHBP1-203ENST00000431146 RANGAP1P46060 587 aaPredicted RBP26.23■■□□□ 1.79
USHBP1-203ENST00000431146 IGF1RP08069 1367 aa26.19■■□□□ 1.78
USHBP1-203ENST00000431146 CLIP1P30622 1438 aa26.19■■□□□ 1.78
USHBP1-203ENST00000431146 ABCA10Q8WWZ4 1543 aa26.15■■□□□ 1.78
USHBP1-203ENST00000431146 CARMIL1Q5VZK9 1371 aa26.07■■□□□ 1.76
USHBP1-203ENST00000431146 TTBK1Q5TCY1 1321 aaPredicted RBP26.06■■□□□ 1.76
USHBP1-203ENST00000431146 WDR97A6NE52 1622 aa26.06■■□□□ 1.76
USHBP1-203ENST00000431146 MRC2Q9UBG0 1479 aa25.99■■□□□ 1.75
USHBP1-203ENST00000431146 TDRD9Q8NDG6 1382 aaKnown RBP25.99■■□□□ 1.75
USHBP1-203ENST00000431146 VPS8Q8N3P4 1428 aa25.96■■□□□ 1.75
USHBP1-203ENST00000431146 TARBP1Q13395 1621 aaKnown RBP25.93■■□□□ 1.74
USHBP1-203ENST00000431146 ABCA5Q8WWZ7 1642 aa25.93■■□□□ 1.74
USHBP1-203ENST00000431146 HRCP23327 699 aa25.91■■□□□ 1.74
USHBP1-203ENST00000431146 ARAP1Q96P48 1450 aa25.9■■□□□ 1.74
USHBP1-203ENST00000431146 GAPVD1Q14C86 1478 aa25.89■■□□□ 1.74
USHBP1-203ENST00000431146 CUL7Q14999 1698 aa25.88■■□□□ 1.73
USHBP1-203ENST00000431146 ERCC6Q03468 1493 aa25.88■■□□□ 1.73
USHBP1-203ENST00000431146 ARHGAP35Q9NRY4 1499 aa25.84■■□□□ 1.73
USHBP1-203ENST00000431146 WDR62O43379 1518 aa25.83■■□□□ 1.73
USHBP1-203ENST00000431146 AQRO60306 1485 aaKnown RBP eCLIP25.78■■□□□ 1.72
USHBP1-203ENST00000431146 APLP2Q06481 763 aa25.75■■□□□ 1.71
USHBP1-203ENST00000431146 PBRM1Q86U86 1689 aa25.74■■□□□ 1.71
USHBP1-203ENST00000431146 THOC2Q8NI27 1593 aaKnown RBP25.73■■□□□ 1.71
USHBP1-203ENST00000431146 ZNF608Q9ULD9 1512 aaPredicted RBP25.71■■□□□ 1.71
USHBP1-203ENST00000431146 CTTNBP2Q8WZ74 1663 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms