RNA–Protein interactions for RNA: ENST00000404040.5

HDAC11-204, Transcript of histone deacetylase 11, humanhuman

TSL 3 BASIC

Gene HDAC11, Length 967 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC11-204ENST00000404040 NISCHQ9Y2I1 1504 aa45.42■■■■■ 4.86
HDAC11-204ENST00000404040 ABCC9O60706 1549 aa41.13■■■■■ 4.17
HDAC11-204ENST00000404040 CCDC180Q9P1Z9 1646 aa41.04■■■■■ 4.16
HDAC11-204ENST00000404040 RB1CC1Q8TDY2 1594 aa39.1■■■■□ 3.85
HDAC11-204ENST00000404040 NACADO15069 1562 aa38.76■■■■□ 3.8
HDAC11-204ENST00000404040 DNAJC5BQ9UF47 199 aa38.73■■■■□ 3.79
HDAC11-204ENST00000404040 UNC13AQ9UPW8 1703 aa38.39■■■■□ 3.74
HDAC11-204ENST00000404040 DCAF8L2P0C7V8 631 aa38.21■■■■□ 3.71
HDAC11-204ENST00000404040 MYO15BQ96JP2 1530 aa38.14■■■■□ 3.7
HDAC11-204ENST00000404040 PABPN1Q86U42 306 aaKnown RBP eCLIP38.12■■■■□ 3.69
HDAC11-204ENST00000404040 BICRAQ9NZM4 1560 aa38■■■■□ 3.67
HDAC11-204ENST00000404040 ZCCHC6Q5VYS8 1495 aaKnown RBP37.62■■■■□ 3.61
HDAC11-204ENST00000404040 DCAF1Q9Y4B6 1507 aa37.54■■■■□ 3.6
HDAC11-204ENST00000404040 SHROOM4Q9ULL8 1493 aa37.47■■■■□ 3.59
HDAC11-204ENST00000404040 SCRIBQ14160 1630 aa37.28■■■■□ 3.56
HDAC11-204ENST00000404040 CC2D2AQ9P2K1 1620 aa37.22■■■■□ 3.55
HDAC11-204ENST00000404040 CECR2Q9BXF3 1484 aa37.08■■■■□ 3.53
HDAC11-204ENST00000404040 EIF4G1Q04637 1599 aaKnown RBP37.07■■■■□ 3.52
HDAC11-204ENST00000404040 DNAJC5Q9H3Z4 198 aa35.79■■■■□ 3.32
HDAC11-204ENST00000404040 NCAPD3P42695 1498 aa35.72■■■■□ 3.31
HDAC11-204ENST00000404040 CUX2O14529 1486 aa35.61■■■■□ 3.29
HDAC11-204ENST00000404040 ATAD2BQ9ULI0 1458 aa35.57■■■■□ 3.28
HDAC11-204ENST00000404040 SMARCA4P51532 1647 aa35.56■■■■□ 3.28
HDAC11-204ENST00000404040 ERCC6Q03468 1493 aa35.53■■■■□ 3.28
HDAC11-204ENST00000404040 HMGXB3Q12766 1538 aa35.52■■■■□ 3.28
HDAC11-204ENST00000404040 SMARCA2P51531 1590 aa35.51■■■■□ 3.28
HDAC11-204ENST00000404040 BAZ1AQ9NRL2 1556 aaPredicted RBP35.3■■■■□ 3.24
HDAC11-204ENST00000404040 NESP48681 1621 aa35.26■■■■□ 3.24
HDAC11-204ENST00000404040 BAZ1BQ9UIG0 1483 aaKnown RBP35.23■■■■□ 3.23
HDAC11-204ENST00000404040 PEG3Q9GZU2 1588 aa35.22■■■■□ 3.23
HDAC11-204ENST00000404040 THOC2Q8NI27 1593 aaKnown RBP35.09■■■■□ 3.21
HDAC11-204ENST00000404040 LAMC3Q9Y6N6 1575 aa35.04■■■■□ 3.2
HDAC11-204ENST00000404040 MROH2BQ7Z745 1585 aa34.99■■■■□ 3.19
HDAC11-204ENST00000404040 KIF21AQ7Z4S6 1674 aa34.95■■■■□ 3.18
HDAC11-204ENST00000404040 PDS5BQ9NTI5 1447 aa34.74■■■■□ 3.15
HDAC11-204ENST00000404040 WIZO95785 1651 aa34.6■■■■□ 3.13
HDAC11-204ENST00000404040 CADPSQ9ULU8 1353 aa34.57■■■■□ 3.12
HDAC11-204ENST00000404040 MRC2Q9UBG0 1479 aa34.52■■■■□ 3.12
HDAC11-204ENST00000404040 WDR62O43379 1518 aa34.5■■■■□ 3.11
HDAC11-204ENST00000404040 CEP164Q9UPV0 1460 aa34.32■■■■□ 3.08
HDAC11-204ENST00000404040 FANCD2Q9BXW9 1451 aa34.23■■■■□ 3.07
HDAC11-204ENST00000404040 CFTRP13569 1480 aa34.17■■■■□ 3.06
HDAC11-204ENST00000404040 TOP2AP11388 1531 aaKnown RBP34.14■■■■□ 3.06
HDAC11-204ENST00000404040 RSF1Q96T23 1441 aaPredicted RBP34.1■■■■□ 3.05
HDAC11-204ENST00000404040 PRDM2Q13029 1718 aa34.07■■■■□ 3.05
HDAC11-204ENST00000404040 TRIM41Q8WV44 630 aa34.05■■■■□ 3.04
HDAC11-204ENST00000404040 URB2Q14146 1524 aaKnown RBP33.99■■■■□ 3.03
HDAC11-204ENST00000404040 OSCARQ8IYS5 282 aa33.78■■■■□ 3
HDAC11-204ENST00000404040 CCDC88BA6NC98 1476 aa33.68■■■□□ 2.98
HDAC11-204ENST00000404040 IFT140Q96RY7 1462 aa33.63■■■□□ 2.97
HDAC11-204ENST00000404040 ZNF608Q9ULD9 1512 aaPredicted RBP33.6■■■□□ 2.97
HDAC11-204ENST00000404040 TOPBP1Q92547 1522 aa33.58■■■□□ 2.97
HDAC11-204ENST00000404040 RIMBP3CA6NJZ7 1639 aa33.58■■■□□ 2.97
HDAC11-204ENST00000404040 RIMBP3BA6NNM3 1639 aa33.58■■■□□ 2.97
HDAC11-204ENST00000404040 RIMBP3Q9UFD9 1639 aa33.58■■■□□ 2.97
HDAC11-204ENST00000404040 EIF4G3O43432 1585 aaKnown RBP33.51■■■□□ 2.96
HDAC11-204ENST00000404040 DNMBPQ6XZF7 1577 aa33.47■■■□□ 2.95
HDAC11-204ENST00000404040 ABCC8Q09428 1581 aa33.47■■■□□ 2.95
HDAC11-204ENST00000404040 ARHGEF11O15085 1522 aa33.4■■■□□ 2.94
HDAC11-204ENST00000404040 CHD1O14646 1710 aa33.37■■■□□ 2.93
HDAC11-204ENST00000404040 TARBP1Q13395 1621 aaKnown RBP33.37■■■□□ 2.93
HDAC11-204ENST00000404040 AQRO60306 1485 aaKnown RBP eCLIP33.21■■■□□ 2.911e-6■■■■■ 29
HDAC11-204ENST00000404040 POLA1P09884 1462 aaPredicted RBP33.21■■■□□ 2.91
HDAC11-204ENST00000404040 ARAP1Q96P48 1450 aa33.05■■■□□ 2.88
HDAC11-204ENST00000404040 RAD54L2Q9Y4B4 1467 aa33.05■■■□□ 2.88
HDAC11-204ENST00000404040 WDR97A6NE52 1622 aa33.04■■■□□ 2.88
HDAC11-204ENST00000404040 CYB5RLQ6IPT4 315 aa33■■■□□ 2.87
HDAC11-204ENST00000404040 SOGA1O94964 1423 aa32.97■■■□□ 2.87
HDAC11-204ENST00000404040 FGD5Q6ZNL6 1462 aa32.96■■■□□ 2.87
HDAC11-204ENST00000404040 FBLN2P98095 1184 aa32.95■■■□□ 2.87
HDAC11-204ENST00000404040 TDRD9Q8NDG6 1382 aaKnown RBP32.93■■■□□ 2.86
HDAC11-204ENST00000404040 SNAPC4Q5SXM2 1469 aa32.93■■■□□ 2.86
HDAC11-204ENST00000404040 CUX1P39880 1505 aa32.91■■■□□ 2.86
HDAC11-204ENST00000404040 CLASP1Q7Z460 1538 aa32.91■■■□□ 2.86
HDAC11-204ENST00000404040 MAGI1Q96QZ7 1491 aaPredicted RBP32.85■■■□□ 2.85
HDAC11-204ENST00000404040 SYNJ1O43426 1573 aa32.83■■■□□ 2.85
HDAC11-204ENST00000404040 PBRM1Q86U86 1689 aa32.81■■■□□ 2.84
HDAC11-204ENST00000404040 GRIN2BQ13224 1484 aa32.78■■■□□ 2.84
HDAC11-204ENST00000404040 SYNJ2O15056 1496 aa32.73■■■□□ 2.83
HDAC11-204ENST00000404040 TRHP20396 242 aaPredicted RBP32.7■■■□□ 2.83
HDAC11-204ENST00000404040 CHMP7Q8WUX9 453 aaPredicted RBP32.68■■■□□ 2.82
HDAC11-204ENST00000404040 ABCA5Q8WWZ7 1642 aa32.66■■■□□ 2.82
HDAC11-204ENST00000404040 GAPVD1Q14C86 1478 aa32.61■■■□□ 2.81
HDAC11-204ENST00000404040 ABCA10Q8WWZ4 1543 aa32.58■■■□□ 2.81
HDAC11-204ENST00000404040 ADAMTS12P58397 1594 aa32.41■■■□□ 2.78
HDAC11-204ENST00000404040 BIVM-ERCC5R4GMW8 1640 aa32.4■■■□□ 2.78
HDAC11-204ENST00000404040 GRIN2AQ12879 1464 aa32.38■■■□□ 2.77
HDAC11-204ENST00000404040 TOP2BQ02880 1626 aa32.34■■■□□ 2.77
HDAC11-204ENST00000404040 ERCC6L2Q5T890 1561 aa32.34■■■□□ 2.77
HDAC11-204ENST00000404040 CEP170Q5SW79 1584 aa32.33■■■□□ 2.77
HDAC11-204ENST00000404040 WRNQ14191 1432 aaPredicted RBP eCLIP32.33■■■□□ 2.775e-6■■■■■ 29.2
HDAC11-204ENST00000404040 NUP160Q12769 1436 aa32.28■■■□□ 2.76
HDAC11-204ENST00000404040 SHROOM2Q13796 1616 aa32.27■■■□□ 2.76
HDAC11-204ENST00000404040 SUPT5HO00267 1087 aaKnown RBP32.23■■■□□ 2.75
HDAC11-204ENST00000404040 ERICH3Q5RHP9 1530 aa32.19■■■□□ 2.74
HDAC11-204ENST00000404040 FHAD1B1AJZ9 1412 aa32.18■■■□□ 2.74
HDAC11-204ENST00000404040 KIF13AQ9H1H9 1805 aa32.05■■■□□ 2.72
HDAC11-204ENST00000404040 RUSC2Q8N2Y8 1516 aa31.98■■■□□ 2.71
HDAC11-204ENST00000404040 AEBP2Q6ZN18 517 aaPredicted RBP31.96■■■□□ 2.71
HDAC11-204ENST00000404040 PRG4Q92954 1404 aaPredicted RBP31.93■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms