Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC131212.1-201ENST00000613771 668 ntBASIC20.31■□□□□ 0.84
USF1P22415 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
USF1P22415 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USF1P22415 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USF1P22415 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
USF1P22415 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USF1P22415 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USF1P22415 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
USF1P22415 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.3■□□□□ 0.84
USF1P22415 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
USF1P22415 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USF1P22415 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USF1P22415 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USF1P22415 AL592295.1-201ENST00000400984 884 ntBASIC20.29■□□□□ 0.84
USF1P22415 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USF1P22415 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.29■□□□□ 0.84
USF1P22415 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
USF1P22415 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.28■□□□□ 0.84
USF1P22415 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USF1P22415 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
USF1P22415 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.28■□□□□ 0.84
USF1P22415 RPS2P7-201ENST00000447334 885 ntBASIC20.28■□□□□ 0.84
USF1P22415 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.28■□□□□ 0.84
USF1P22415 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
USF1P22415 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USF1P22415 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USF1P22415 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USF1P22415 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
USF1P22415 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
USF1P22415 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.27■□□□□ 0.84
USF1P22415 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.26■□□□□ 0.83
USF1P22415 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USF1P22415 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
USF1P22415 THA1P-201ENST00000590384 1145 ntBASIC20.26■□□□□ 0.83
USF1P22415 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USF1P22415 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
USF1P22415 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USF1P22415 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USF1P22415 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USF1P22415 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USF1P22415 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.26■□□□□ 0.83
USF1P22415 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USF1P22415 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
USF1P22415 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.26■□□□□ 0.83
USF1P22415 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.25■□□□□ 0.83
USF1P22415 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
USF1P22415 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USF1P22415 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USF1P22415 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USF1P22415 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.24■□□□□ 0.83
USF1P22415 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USF1P22415 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USF1P22415 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USF1P22415 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.24■□□□□ 0.83
USF1P22415 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.24■□□□□ 0.83
USF1P22415 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USF1P22415 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USF1P22415 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USF1P22415 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USF1P22415 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
USF1P22415 KRT18P10-201ENST00000388836 1287 ntBASIC20.23■□□□□ 0.83
USF1P22415 LONRF2P2-201ENST00000439212 571 ntBASIC20.23■□□□□ 0.83
USF1P22415 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.23■□□□□ 0.83
USF1P22415 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USF1P22415 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.23■□□□□ 0.83
USF1P22415 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USF1P22415 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
USF1P22415 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
USF1P22415 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
USF1P22415 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USF1P22415 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USF1P22415 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.22■□□□□ 0.83
USF1P22415 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.22■□□□□ 0.83
USF1P22415 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
USF1P22415 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USF1P22415 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USF1P22415 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USF1P22415 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USF1P22415 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.21■□□□□ 0.83
USF1P22415 AC239859.2-201ENST00000444165 318 ntBASIC20.21■□□□□ 0.83
USF1P22415 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.21■□□□□ 0.83
USF1P22415 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USF1P22415 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.21■□□□□ 0.83
USF1P22415 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
USF1P22415 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USF1P22415 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
USF1P22415 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USF1P22415 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USF1P22415 AL356441.2-201ENST00000443009 864 ntBASIC20.2■□□□□ 0.82
USF1P22415 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USF1P22415 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
USF1P22415 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
USF1P22415 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USF1P22415 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USF1P22415 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.19■□□□□ 0.82
USF1P22415 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.19■□□□□ 0.82
USF1P22415 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.19■□□□□ 0.82
USF1P22415 Z92544.1-202ENST00000571933 1220 ntBASIC20.19■□□□□ 0.82
USF1P22415 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
USF1P22415 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms