Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
FREM3P0C091 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
FREM3P0C091 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.94■■□□□ 1.1
FREM3P0C091 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.94■■□□□ 1.1
FREM3P0C091 RARRES2P1-201ENST00000474487 481 ntBASIC21.94■■□□□ 1.1
FREM3P0C091 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
FREM3P0C091 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
FREM3P0C091 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.93■■□□□ 1.1
FREM3P0C091 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
FREM3P0C091 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
FREM3P0C091 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.93■■□□□ 1.1
FREM3P0C091 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
FREM3P0C091 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
FREM3P0C091 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.92■■□□□ 1.1
FREM3P0C091 AC139795.1-202ENST00000500444 432 ntBASIC21.92■■□□□ 1.1
FREM3P0C091 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.92■■□□□ 1.1
FREM3P0C091 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.92■■□□□ 1.1
FREM3P0C091 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
FREM3P0C091 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
FREM3P0C091 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
FREM3P0C091 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
FREM3P0C091 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
FREM3P0C091 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
FREM3P0C091 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
FREM3P0C091 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.9■■□□□ 1.1
FREM3P0C091 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
FREM3P0C091 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC21.9■■□□□ 1.1
FREM3P0C091 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
FREM3P0C091 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
FREM3P0C091 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
FREM3P0C091 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
FREM3P0C091 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.89■■□□□ 1.09
FREM3P0C091 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
FREM3P0C091 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
FREM3P0C091 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.88■■□□□ 1.09
FREM3P0C091 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
FREM3P0C091 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
FREM3P0C091 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.87■■□□□ 1.09
FREM3P0C091 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
FREM3P0C091 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
FREM3P0C091 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
FREM3P0C091 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.86■■□□□ 1.09
FREM3P0C091 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
FREM3P0C091 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.86■■□□□ 1.09
FREM3P0C091 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
FREM3P0C091 AC103724.3-201ENST00000564481 992 ntBASIC21.86■■□□□ 1.09
FREM3P0C091 MIR4508-201ENST00000584178 70 ntBASIC21.85■■□□□ 1.09
FREM3P0C091 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.85■■□□□ 1.09
FREM3P0C091 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
FREM3P0C091 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.85■■□□□ 1.09
FREM3P0C091 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
FREM3P0C091 ERN1-208ENST00000606895 2068 ntBASIC21.85■■□□□ 1.09
FREM3P0C091 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
FREM3P0C091 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
FREM3P0C091 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
FREM3P0C091 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.84■■□□□ 1.09
FREM3P0C091 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.84■■□□□ 1.09
FREM3P0C091 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.84■■□□□ 1.09
FREM3P0C091 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.83■■□□□ 1.09
FREM3P0C091 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.83■■□□□ 1.09
FREM3P0C091 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
FREM3P0C091 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
FREM3P0C091 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
FREM3P0C091 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
FREM3P0C091 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
FREM3P0C091 AL451085.2-201ENST00000605085 799 ntBASIC21.83■■□□□ 1.08
FREM3P0C091 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
FREM3P0C091 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
FREM3P0C091 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
FREM3P0C091 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.82■■□□□ 1.08
FREM3P0C091 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
FREM3P0C091 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
FREM3P0C091 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.81■■□□□ 1.08
FREM3P0C091 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.8■■□□□ 1.08
FREM3P0C091 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
FREM3P0C091 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
FREM3P0C091 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.79■■□□□ 1.08
FREM3P0C091 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
FREM3P0C091 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
FREM3P0C091 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
FREM3P0C091 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
FREM3P0C091 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
FREM3P0C091 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.79■■□□□ 1.08
FREM3P0C091 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.79■■□□□ 1.08
FREM3P0C091 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.79■■□□□ 1.08
FREM3P0C091 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.78■■□□□ 1.08
FREM3P0C091 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
FREM3P0C091 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
FREM3P0C091 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
FREM3P0C091 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.78■■□□□ 1.08
FREM3P0C091 AC010980.1-201ENST00000587192 1142 ntBASIC21.78■■□□□ 1.08
FREM3P0C091 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
FREM3P0C091 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
FREM3P0C091 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
FREM3P0C091 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
FREM3P0C091 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
FREM3P0C091 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
FREM3P0C091 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
FREM3P0C091 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
FREM3P0C091 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms