Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
VIMP08670 AC096887.2-201ENST00000623443 1957 ntBASIC23.99■■□□□ 1.43
VIMP08670 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VIMP08670 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC23.99■■□□□ 1.43
VIMP08670 AC097639.1-201ENST00000565519 1891 ntBASIC23.98■■□□□ 1.43
VIMP08670 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VIMP08670 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
VIMP08670 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
VIMP08670 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC23.98■■□□□ 1.43
VIMP08670 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC23.98■■□□□ 1.43
VIMP08670 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.97■■□□□ 1.43
VIMP08670 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
VIMP08670 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.97■■□□□ 1.43
VIMP08670 AC108673.1-201ENST00000510422 1159 ntBASIC23.97■■□□□ 1.43
VIMP08670 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.97■■□□□ 1.43
VIMP08670 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC23.96■■□□□ 1.43
VIMP08670 AC079834.2-201ENST00000609776 1949 ntBASIC23.96■■□□□ 1.43
VIMP08670 EED-207ENST00000528180 1745 ntTSL 5 BASIC23.96■■□□□ 1.43
VIMP08670 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
VIMP08670 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VIMP08670 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.95■■□□□ 1.43
VIMP08670 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.43
VIMP08670 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.95■■□□□ 1.42
VIMP08670 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
VIMP08670 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.95■■□□□ 1.42
VIMP08670 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.95■■□□□ 1.42
VIMP08670 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VIMP08670 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VIMP08670 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VIMP08670 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VIMP08670 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
VIMP08670 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VIMP08670 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.93■■□□□ 1.42
VIMP08670 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
VIMP08670 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC23.93■■□□□ 1.42
VIMP08670 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
VIMP08670 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.92■■□□□ 1.42
VIMP08670 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC23.92■■□□□ 1.42
VIMP08670 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
VIMP08670 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 AC110285.7-201ENST00000624417 1536 ntBASIC23.92■■□□□ 1.42
VIMP08670 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
VIMP08670 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.92■■□□□ 1.42
VIMP08670 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC23.92■■□□□ 1.42
VIMP08670 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
VIMP08670 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.91■■□□□ 1.42
VIMP08670 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VIMP08670 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.91■■□□□ 1.42
VIMP08670 MIR6090-201ENST00000622481 60 ntBASIC23.91■■□□□ 1.42
VIMP08670 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.91■■□□□ 1.42
VIMP08670 AP003733.4-201ENST00000623785 1697 ntBASIC23.91■■□□□ 1.42
VIMP08670 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.91■■□□□ 1.42
VIMP08670 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.9■■□□□ 1.42
VIMP08670 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VIMP08670 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VIMP08670 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.9■■□□□ 1.42
VIMP08670 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VIMP08670 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VIMP08670 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VIMP08670 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.89■■□□□ 1.42
VIMP08670 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
VIMP08670 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
VIMP08670 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
VIMP08670 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
VIMP08670 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
VIMP08670 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.88■■□□□ 1.41
VIMP08670 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VIMP08670 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
VIMP08670 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
VIMP08670 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.88■■□□□ 1.41
VIMP08670 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.87■■□□□ 1.41
VIMP08670 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.87■■□□□ 1.41
VIMP08670 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
VIMP08670 LINC00543-201ENST00000567234 1845 ntBASIC23.87■■□□□ 1.41
VIMP08670 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
VIMP08670 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.87■■□□□ 1.41
VIMP08670 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.87■■□□□ 1.41
VIMP08670 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.87■■□□□ 1.41
VIMP08670 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VIMP08670 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.86■■□□□ 1.41
VIMP08670 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VIMP08670 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.86■■□□□ 1.41
VIMP08670 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VIMP08670 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
VIMP08670 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
VIMP08670 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
VIMP08670 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms