Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 PAWRP1-201ENST00000451083 565 ntBASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 RPS15P9-201ENST00000494093 319 ntBASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 RNA5SP419-201ENST00000515908 135 ntBASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 ETFA-208ENST00000559602 792 ntTSL 3 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 AL356488.2-201ENST00000602755 427 ntBASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
SMC4Q9NTJ3 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SMC4Q9NTJ3 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SMC4Q9NTJ3 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC21.89■■□□□ 1.1
SMC4Q9NTJ3 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
SMC4Q9NTJ3 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.1
SMC4Q9NTJ3 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC21.89■■□□□ 1.1
SMC4Q9NTJ3 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
SMC4Q9NTJ3 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC21.89■■□□□ 1.1
SMC4Q9NTJ3 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SMC4Q9NTJ3 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 INIP-202ENST00000374236 874 ntTSL 2 BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 RPS29-206ENST00000557111 488 ntTSL 2 BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 AC011676.5-201ENST00000624864 2660 ntBASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SMC4Q9NTJ3 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 PCDHB17P-201ENST00000539533 2393 ntBASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 RPS2P28-201ENST00000314255 741 ntBASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 MIR1199-201ENST00000621445 119 ntBASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMC4Q9NTJ3 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 RNF216P1-203ENST00000404404 2427 ntBASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMC4Q9NTJ3 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms