RNA–Protein interactions for RNA: ENST00000575882.5

TOM1L1-221, Transcript of target of myb1 like 1 membrane trafficking protein, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TOM1L1, Length 2,507 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOM1L1-221ENST00000575882 NISCHQ9Y2I1 1504 aa35.06■■■■□ 3.2
TOM1L1-221ENST00000575882 SHROOM4Q9ULL8 1493 aa30.1■■■□□ 2.41
TOM1L1-221ENST00000575882 ZCCHC6Q5VYS8 1495 aaKnown RBP29.72■■■□□ 2.35
TOM1L1-221ENST00000575882 CCDC180Q9P1Z9 1646 aa29.67■■■□□ 2.34
TOM1L1-221ENST00000575882 SUPT5HO00267 1087 aaKnown RBP29.64■■■□□ 2.34
TOM1L1-221ENST00000575882 DCAF8L2P0C7V8 631 aa29■■■□□ 2.23
TOM1L1-221ENST00000575882 CHIC1Q5VXU3 224 aa28.94■■■□□ 2.22
TOM1L1-221ENST00000575882 MYO15BQ96JP2 1530 aa28.92■■■□□ 2.22
TOM1L1-221ENST00000575882 DCAF1Q9Y4B6 1507 aa28.75■■■□□ 2.19
TOM1L1-221ENST00000575882 HRCP23327 699 aa28.51■■■□□ 2.16
TOM1L1-221ENST00000575882 PCGF6Q9BYE7 350 aa28.32■■■□□ 2.12
TOM1L1-221ENST00000575882 ABCC9O60706 1549 aa28.1■■■□□ 2.09
TOM1L1-221ENST00000575882 LOC105371045A0A1W2PR82 267 aa28.1■■■□□ 2.09
TOM1L1-221ENST00000575882 SCRIBQ14160 1630 aa27.89■■■□□ 2.06
TOM1L1-221ENST00000575882 PPARGC1BQ86YN6 1023 aaKnown RBP27.88■■■□□ 2.05
TOM1L1-221ENST00000575882 RSF1Q96T23 1441 aaPredicted RBP27.85■■■□□ 2.05
TOM1L1-221ENST00000575882 TRIM26Q12899 539 aaPredicted RBP27.72■■■□□ 2.03
TOM1L1-221ENST00000575882 RB1CC1Q8TDY2 1594 aa27.62■■■□□ 2.01
TOM1L1-221ENST00000575882 TRIM41Q8WV44 630 aa27.59■■■□□ 2.01
TOM1L1-221ENST00000575882 FAM9AQ8IZU1 332 aaPredicted RBP27.38■■□□□ 1.97
TOM1L1-221ENST00000575882 NACADO15069 1562 aa27.38■■□□□ 1.97
TOM1L1-221ENST00000575882 CECR2Q9BXF3 1484 aa27.34■■□□□ 1.97
TOM1L1-221ENST00000575882 MROH2BQ7Z745 1585 aa27.28■■□□□ 1.96
TOM1L1-221ENST00000575882 ZEB1P37275 1124 aaPredicted RBP27.23■■□□□ 1.95
TOM1L1-221ENST00000575882 WIZO95785 1651 aa27.15■■□□□ 1.94
TOM1L1-221ENST00000575882 EHMT2Q96KQ7 1210 aa27.15■■□□□ 1.94
TOM1L1-221ENST00000575882 BAZ1AQ9NRL2 1556 aaPredicted RBP27.01■■□□□ 1.91
TOM1L1-221ENST00000575882 EIF4G1Q04637 1599 aaKnown RBP26.91■■□□□ 1.9
TOM1L1-221ENST00000575882 TOP2AP11388 1531 aaKnown RBP26.72■■□□□ 1.87
TOM1L1-221ENST00000575882 SMARCA4P51532 1647 aa26.65■■□□□ 1.86
TOM1L1-221ENST00000575882 ABCC8Q09428 1581 aa26.65■■□□□ 1.86
TOM1L1-221ENST00000575882 CCDC88BA6NC98 1476 aa26.62■■□□□ 1.85
TOM1L1-221ENST00000575882 SMARCA2P51531 1590 aa26.59■■□□□ 1.85
TOM1L1-221ENST00000575882 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.57■■□□□ 1.84
TOM1L1-221ENST00000575882 CCER1Q8TC90 406 aaPredicted RBP26.52■■□□□ 1.84
TOM1L1-221ENST00000575882 WRNQ14191 1432 aaPredicted RBP eCLIP26.49■■□□□ 1.83
TOM1L1-221ENST00000575882 UNC13AQ9UPW8 1703 aa26.49■■□□□ 1.83
TOM1L1-221ENST00000575882 CEP162Q5TB80 1403 aa26.46■■□□□ 1.83
TOM1L1-221ENST00000575882 SOGA1O94964 1423 aa26.44■■□□□ 1.82
TOM1L1-221ENST00000575882 SCAF1Q9H7N4 1312 aaKnown RBP26.43■■□□□ 1.82
TOM1L1-221ENST00000575882 TNIKQ9UKE5 1360 aa26.38■■□□□ 1.81
TOM1L1-221ENST00000575882 TTBK1Q5TCY1 1321 aaPredicted RBP26.36■■□□□ 1.81
TOM1L1-221ENST00000575882 EEA1Q15075 1411 aa26.35■■□□□ 1.81
TOM1L1-221ENST00000575882 CSRNP3Q8WYN3 585 aa26.31■■□□□ 1.8
TOM1L1-221ENST00000575882 RUSC2Q8N2Y8 1516 aa26.3■■□□□ 1.8
TOM1L1-221ENST00000575882 UBTFP17480 764 aaKnown RBP26.24■■□□□ 1.79
TOM1L1-221ENST00000575882 GOLGA3Q08378 1498 aa26.2■■□□□ 1.78
TOM1L1-221ENST00000575882 PELP1Q8IZL8 1130 aaKnown RBP26.19■■□□□ 1.78
TOM1L1-221ENST00000575882 PABPN1Q86U42 306 aaKnown RBP eCLIP26.15■■□□□ 1.78
TOM1L1-221ENST00000575882 BICRAQ9NZM4 1560 aa26.14■■□□□ 1.78
TOM1L1-221ENST00000575882 DIEXFQ68CQ4 756 aaKnown RBP26.14■■□□□ 1.78
TOM1L1-221ENST00000575882 PEG3Q9GZU2 1588 aa26.11■■□□□ 1.77
TOM1L1-221ENST00000575882 ACIN1Q9UKV3 1341 aaKnown RBP26.1■■□□□ 1.77
TOM1L1-221ENST00000575882 NEUROD1Q13562 356 aa26.04■■□□□ 1.76
TOM1L1-221ENST00000575882 SYNJ1O43426 1573 aa26.03■■□□□ 1.76
TOM1L1-221ENST00000575882 CEP164Q9UPV0 1460 aa26.02■■□□□ 1.76
TOM1L1-221ENST00000575882 KIF21BO75037 1637 aa25.99■■□□□ 1.75
TOM1L1-221ENST00000575882 CENPBP07199 599 aaPredicted RBP25.92■■□□□ 1.74
TOM1L1-221ENST00000575882 CLIP1P30622 1438 aa25.91■■□□□ 1.74
TOM1L1-221ENST00000575882 ATAD2BQ9ULI0 1458 aa25.9■■□□□ 1.74
TOM1L1-221ENST00000575882 ZNF316A6NFI3 1004 aaPredicted RBP25.88■■□□□ 1.73
TOM1L1-221ENST00000575882 BAZ1BQ9UIG0 1483 aaKnown RBP25.85■■□□□ 1.73
TOM1L1-221ENST00000575882 VPS8Q8N3P4 1428 aa25.83■■□□□ 1.73
TOM1L1-221ENST00000575882 HNRNPUL2Q1KMD3 747 aaKnown RBP25.82■■□□□ 1.72
TOM1L1-221ENST00000575882 GTF3C3Q9Y5Q9 886 aa25.8■■□□□ 1.72
TOM1L1-221ENST00000575882 RAPGEF2Q9Y4G8 1499 aa25.8■■□□□ 1.72
TOM1L1-221ENST00000575882 APLP2Q06481 763 aa25.72■■□□□ 1.71
TOM1L1-221ENST00000575882 TOP2BQ02880 1626 aa25.68■■□□□ 1.7
TOM1L1-221ENST00000575882 RANGAP1P46060 587 aaPredicted RBP25.66■■□□□ 1.7
TOM1L1-221ENST00000575882 BIVM-ERCC5R4GMW8 1640 aa25.58■■□□□ 1.69
TOM1L1-221ENST00000575882 YTHDC1Q96MU7 727 aaKnown RBP25.55■■□□□ 1.68
TOM1L1-221ENST00000575882 MIER1Q8N108 512 aa25.54■■□□□ 1.68
TOM1L1-221ENST00000575882 ERICH3Q5RHP9 1530 aa25.52■■□□□ 1.68
TOM1L1-221ENST00000575882 PRXQ9BXM0 1461 aa25.5■■□□□ 1.67
TOM1L1-221ENST00000575882 ARAP1Q96P48 1450 aa25.46■■□□□ 1.67
TOM1L1-221ENST00000575882 CUX1P39880 1505 aa25.38■■□□□ 1.65
TOM1L1-221ENST00000575882 CLSPNQ9HAW4 1339 aa25.37■■□□□ 1.65
TOM1L1-221ENST00000575882 DHX57Q6P158 1386 aaKnown RBP25.36■■□□□ 1.65
TOM1L1-221ENST00000575882 HMGXB3Q12766 1538 aa25.36■■□□□ 1.65
TOM1L1-221ENST00000575882 KANK4Q5T7N3 995 aaPredicted RBP25.35■■□□□ 1.65
TOM1L1-221ENST00000575882 NCAPD3P42695 1498 aa25.33■■□□□ 1.65
TOM1L1-221ENST00000575882 KIF27Q86VH2 1401 aa25.33■■□□□ 1.65
TOM1L1-221ENST00000575882 RRBP1Q9P2E9 1410 aaKnown RBP25.26■■□□□ 1.63
TOM1L1-221ENST00000575882 CFTRP13569 1480 aa25.22■■□□□ 1.63
TOM1L1-221ENST00000575882 ARHGAP35Q9NRY4 1499 aa25.2■■□□□ 1.62
TOM1L1-221ENST00000575882 MYT1Q01538 1121 aa25.18■■□□□ 1.62
TOM1L1-221ENST00000575882 CUX2O14529 1486 aa25.15■■□□□ 1.62
TOM1L1-221ENST00000575882 CCNB3Q8WWL7 1395 aa25.15■■□□□ 1.62
TOM1L1-221ENST00000575882 ITGAEP38570 1179 aa25.04■■□□□ 1.6
TOM1L1-221ENST00000575882 IGF1RP08069 1367 aa25.02■■□□□ 1.6
TOM1L1-221ENST00000575882 PRDM2Q13029 1718 aa25.02■■□□□ 1.6
TOM1L1-221ENST00000575882 TIAM1Q13009 1591 aa24.98■■□□□ 1.59
TOM1L1-221ENST00000575882 RAB3GAP2Q9H2M9 1393 aa24.96■■□□□ 1.59
TOM1L1-221ENST00000575882 MAP3K1Q13233 1512 aa24.95■■□□□ 1.58
TOM1L1-221ENST00000575882 CARMIL1Q5VZK9 1371 aa24.92■■□□□ 1.58
TOM1L1-221ENST00000575882 MAPKBP1O60336 1514 aa24.9■■□□□ 1.58
TOM1L1-221ENST00000575882 FGD5Q6ZNL6 1462 aa24.89■■□□□ 1.57
TOM1L1-221ENST00000575882 CADPSQ9ULU8 1353 aa24.88■■□□□ 1.57
TOM1L1-221ENST00000575882 LRRC9Q6ZRR7 1453 aa24.88■■□□□ 1.57
TOM1L1-221ENST00000575882 SETD5Q9C0A6 1442 aa24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms