RNA–Protein interactions for RNA: ENST00000311550.9

GABRB3-202, Transcript of gamma-aminobutyric acid type A receptor beta3 subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABRB3, Length 5,781 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRB3-202ENST00000311550 NISCHQ9Y2I1 1504 aa30.07■■■□□ 2.4
GABRB3-202ENST00000311550 DCAF8L2P0C7V8 631 aa29.96■■■□□ 2.39
GABRB3-202ENST00000311550 SUPT5HO00267 1087 aaKnown RBP29.07■■■□□ 2.24
GABRB3-202ENST00000311550 SHROOM4Q9ULL8 1493 aa28.8■■■□□ 2.2
GABRB3-202ENST00000311550 EHMT2Q96KQ7 1210 aa27.92■■■□□ 2.06
GABRB3-202ENST00000311550 PCGF6Q9BYE7 350 aa27.38■■□□□ 1.97
GABRB3-202ENST00000311550 FAM9AQ8IZU1 332 aaPredicted RBP27.34■■□□□ 1.97
GABRB3-202ENST00000311550 TTBK1Q5TCY1 1321 aaPredicted RBP26.99■■□□□ 1.91
GABRB3-202ENST00000311550 TRIM41Q8WV44 630 aa26.83■■□□□ 1.89
GABRB3-202ENST00000311550 APLP2Q06481 763 aa26.8■■□□□ 1.88
GABRB3-202ENST00000311550 RANGAP1P46060 587 aaPredicted RBP26.53■■□□□ 1.84
GABRB3-202ENST00000311550 ZEB1P37275 1124 aaPredicted RBP26.48■■□□□ 1.83
GABRB3-202ENST00000311550 CCER1Q8TC90 406 aaPredicted RBP26.47■■□□□ 1.83
GABRB3-202ENST00000311550 PELP1Q8IZL8 1130 aaKnown RBP26.38■■□□□ 1.81
GABRB3-202ENST00000311550 PPARGC1BQ86YN6 1023 aaKnown RBP26.36■■□□□ 1.81
GABRB3-202ENST00000311550 CHIC1Q5VXU3 224 aa26.36■■□□□ 1.81
GABRB3-202ENST00000311550 LOC105371045A0A1W2PR82 267 aa26.31■■□□□ 1.8
GABRB3-202ENST00000311550 UBTFP17480 764 aaKnown RBP26.28■■□□□ 1.8
GABRB3-202ENST00000311550 HRCP23327 699 aa26.26■■□□□ 1.79
GABRB3-202ENST00000311550 TRIM26Q12899 539 aaPredicted RBP26.2■■□□□ 1.78
GABRB3-202ENST00000311550 CENPBP07199 599 aaPredicted RBP26.18■■□□□ 1.78
GABRB3-202ENST00000311550 ATP1B4Q9UN42 357 aaPredicted RBP25.98■■□□□ 1.75
GABRB3-202ENST00000311550 YTHDC1Q96MU7 727 aaKnown RBP25.94■■□□□ 1.74
GABRB3-202ENST00000311550 HNRNPUL2Q1KMD3 747 aaKnown RBP25.54■■□□□ 1.68
GABRB3-202ENST00000311550 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.52■■□□□ 1.68
GABRB3-202ENST00000311550 ITGAEP38570 1179 aa25.49■■□□□ 1.67
GABRB3-202ENST00000311550 ERICH6Q7L0X2 663 aa25.37■■□□□ 1.65
GABRB3-202ENST00000311550 NEFLP07196 543 aa25.35■■□□□ 1.65
GABRB3-202ENST00000311550 ABCC9O60706 1549 aa25.32■■□□□ 1.64
GABRB3-202ENST00000311550 DIEXFQ68CQ4 756 aaKnown RBP25.22■■□□□ 1.63
GABRB3-202ENST00000311550 PABPN1Q86U42 306 aaKnown RBP eCLIP25.17■■□□□ 1.62
GABRB3-202ENST00000311550 ZCCHC6Q5VYS8 1495 aaKnown RBP25.02■■□□□ 1.6
GABRB3-202ENST00000311550 POLR3GLQ9BT43 218 aa24.91■■□□□ 1.58
GABRB3-202ENST00000311550 MYT1Q01538 1121 aa24.9■■□□□ 1.58
GABRB3-202ENST00000311550 CNGB1Q14028 1251 aaPredicted RBP24.86■■□□□ 1.57
GABRB3-202ENST00000311550 FAM50AQ14320 339 aaKnown RBP24.82■■□□□ 1.56
GABRB3-202ENST00000311550 GTF3C3Q9Y5Q9 886 aa24.8■■□□□ 1.56
GABRB3-202ENST00000311550 SCRIBQ14160 1630 aa24.74■■□□□ 1.55
GABRB3-202ENST00000311550 CSRNP3Q8WYN3 585 aa24.71■■□□□ 1.55
GABRB3-202ENST00000311550 NEUROD1Q13562 356 aa24.71■■□□□ 1.55
GABRB3-202ENST00000311550 DCAF1Q9Y4B6 1507 aa24.7■■□□□ 1.54
GABRB3-202ENST00000311550 MYO15BQ96JP2 1530 aa24.67■■□□□ 1.54
GABRB3-202ENST00000311550 ZNF316A6NFI3 1004 aaPredicted RBP24.67■■□□□ 1.54
GABRB3-202ENST00000311550 ACIN1Q9UKV3 1341 aaKnown RBP24.54■■□□□ 1.52
GABRB3-202ENST00000311550 MYT1LQ9UL68 1186 aa24.52■■□□□ 1.52
GABRB3-202ENST00000311550 BCANQ96GW7 911 aa24.52■■□□□ 1.52
GABRB3-202ENST00000311550 TRIM52Q96A61 297 aa24.52■■□□□ 1.52
GABRB3-202ENST00000311550 CCDC180Q9P1Z9 1646 aa24.48■■□□□ 1.51
GABRB3-202ENST00000311550 P3H3Q8IVL6 736 aa24.44■■□□□ 1.5
GABRB3-202ENST00000311550 ANP32CO43423 234 aa24.33■■□□□ 1.49
GABRB3-202ENST00000311550 DAXXQ9UER7 740 aaPredicted RBP24.29■■□□□ 1.48
GABRB3-202ENST00000311550 ZNF326Q5BKZ1 582 aaKnown RBP24.25■■□□□ 1.47
GABRB3-202ENST00000311550 RSF1Q96T23 1441 aaPredicted RBP24.23■■□□□ 1.47
GABRB3-202ENST00000311550 ARID3CA6NKF2 412 aa24.23■■□□□ 1.47
GABRB3-202ENST00000311550 SLC4A1APQ9BWU0 796 aaKnown RBP24.13■■□□□ 1.45
GABRB3-202ENST00000311550 FBLN2P98095 1184 aa24.08■■□□□ 1.45
GABRB3-202ENST00000311550 SCAF1Q9H7N4 1312 aaKnown RBP24.08■■□□□ 1.45
GABRB3-202ENST00000311550 CDK11AQ9UQ88 783 aaPredicted RBP23.99■■□□□ 1.43
GABRB3-202ENST00000311550 RTL5Q5HYW3 569 aaPredicted RBP23.98■■□□□ 1.43
GABRB3-202ENST00000311550 DDX10Q13206 875 aaKnown RBP23.97■■□□□ 1.43
GABRB3-202ENST00000311550 MIER1Q8N108 512 aa23.96■■□□□ 1.43
GABRB3-202ENST00000311550 CLSPNQ9HAW4 1339 aa23.96■■□□□ 1.43
GABRB3-202ENST00000311550 CLIP1P30622 1438 aa23.94■■□□□ 1.42
GABRB3-202ENST00000311550 CEP162Q5TB80 1403 aa23.93■■□□□ 1.42
GABRB3-202ENST00000311550 FKBP8Q14318 412 aa23.9■■□□□ 1.42
GABRB3-202ENST00000311550 ZNF777Q9ULD5 760 aaPredicted RBP23.9■■□□□ 1.42
GABRB3-202ENST00000311550 TONSLQ96HA7 1378 aa23.88■■□□□ 1.41
GABRB3-202ENST00000311550 CHIC2Q9UKJ5 165 aa23.78■■□□□ 1.4
GABRB3-202ENST00000311550 GOLGA3Q08378 1498 aa23.78■■□□□ 1.4
GABRB3-202ENST00000311550 HIRIP3Q9BW71 556 aaPredicted RBP23.77■■□□□ 1.4
GABRB3-202ENST00000311550 HNRNPUQ00839 825 aaKnown RBP eCLIP23.77■■□□□ 1.4
GABRB3-202ENST00000311550 CECR2Q9BXF3 1484 aa23.74■■□□□ 1.39
GABRB3-202ENST00000311550 RB1CC1Q8TDY2 1594 aa23.73■■□□□ 1.39
GABRB3-202ENST00000311550 EEA1Q15075 1411 aa23.72■■□□□ 1.39
GABRB3-202ENST00000311550 WRNQ14191 1432 aaPredicted RBP eCLIP23.71■■□□□ 1.39
GABRB3-202ENST00000311550 FAM9BQ8IZU0 186 aa23.69■■□□□ 1.38
GABRB3-202ENST00000311550 TNIKQ9UKE5 1360 aa23.69■■□□□ 1.38
GABRB3-202ENST00000311550 NACADO15069 1562 aa23.65■■□□□ 1.38
GABRB3-202ENST00000311550 MTUS2Q5JR59 1369 aa23.59■■□□□ 1.37
GABRB3-202ENST00000311550 SOGA1O94964 1423 aa23.54■■□□□ 1.36
GABRB3-202ENST00000311550 NPM2Q86SE8 214 aaKnown RBP23.54■■□□□ 1.36
GABRB3-202ENST00000311550 CEP164Q9UPV0 1460 aa23.53■■□□□ 1.36
GABRB3-202ENST00000311550 CANXP27824 592 aaKnown RBP23.52■■□□□ 1.36
GABRB3-202ENST00000311550 SALL2Q9Y467 1007 aaPredicted RBP23.52■■□□□ 1.36
GABRB3-202ENST00000311550 ANP32AP39687 249 aaKnown RBP23.51■■□□□ 1.35
GABRB3-202ENST00000311550 IRX6P78412 446 aaPredicted RBP23.51■■□□□ 1.35
GABRB3-202ENST00000311550 RRP7BPQ9NSQ0 103 aa23.5■■□□□ 1.35
GABRB3-202ENST00000311550 BAZ1BQ9UIG0 1483 aaKnown RBP23.49■■□□□ 1.35
GABRB3-202ENST00000311550 BAZ1AQ9NRL2 1556 aaPredicted RBP23.49■■□□□ 1.35
GABRB3-202ENST00000311550 MRS2Q9HD23 443 aa23.46■■□□□ 1.35
GABRB3-202ENST00000311550 MROH2BQ7Z745 1585 aa23.44■■□□□ 1.34
GABRB3-202ENST00000311550 BCL11AQ9H165 835 aa23.43■■□□□ 1.34
GABRB3-202ENST00000311550 KDM2AQ9Y2K7 1162 aa23.4■■□□□ 1.34
GABRB3-202ENST00000311550 KIF27Q86VH2 1401 aa23.39■■□□□ 1.33
GABRB3-202ENST00000311550 TMC1Q8TDI8 760 aa23.39■■□□□ 1.33
GABRB3-202ENST00000311550 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.38■■□□□ 1.33
GABRB3-202ENST00000311550 SIN3AQ96ST3 1273 aa23.37■■□□□ 1.33
GABRB3-202ENST00000311550 ABCC8Q09428 1581 aa23.37■■□□□ 1.33
GABRB3-202ENST00000311550 EIF4G2P78344 907 aaKnown RBP eCLIP23.35■■□□□ 1.33
GABRB3-202ENST00000311550 CCDC136Q96JN2 1154 aa23.33■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms